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Good stuff Evelyne,
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<div class="">I am glad that it works for you now.</div>
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<div class="">Best wishes, and have a good weekend,</div>
<div class="">Jan-Mathijs</div>
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<div class="">On 23 Jun 2023, at 17:09, Evelyne Fraats via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>> wrote:</div>
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<span class="">Dear all,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">This was indeed the case!<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Within the tapas_physio_read_physlogfiles_brainproducts.m function, I could indeed define the event value.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Goodluck to you all.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
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<span lang="EN-GB" class="">Best,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Evelyne<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
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<b class="">Van:</b><span class="Apple-converted-space"> </span>fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip-bounces@science.ru.nl</a>><span class="Apple-converted-space"> </span><b class="">Namens<span class="Apple-converted-space"> </span></b>Schoffelen,
J.M. (Jan Mathijs) via fieldtrip<br class="">
<b class="">Verzonden:</b><span class="Apple-converted-space"> </span>zaterdag 10 juni 2023 11:31<br class="">
<b class="">Aan:</b><span class="Apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">CC:</b><span class="Apple-converted-space"> </span>Schoffelen, J.M. (Jan Mathijs) <<a href="mailto:janmathijs.schoffelen@donders.ru.nl" style="color: blue; text-decoration: underline;" class="">janmathijs.schoffelen@donders.ru.nl</a>><br class="">
<b class="">Onderwerp:</b><span class="Apple-converted-space"> </span>Re: [FieldTrip] trial error<o:p class=""></o:p></div>
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Dear Evelyne,<span class="Apple-converted-space"> </span><o:p class=""></o:p></div>
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Hmmm, I think that your question is a bit out of scope for the fieldtrip discussion list, because your problem seems constrained to the a problem with the PhysIO toolbox (which uses SPM, which uses Fieldtrip). It’s great that you already have identified that
calling ft_definetrial directly works fine, which makes it unlikely that there’s a bug in the fieldtrip codebase.<o:p class=""></o:p></div>
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I have never worked with this PhysIO toolbox myself, and the combination with the matlabbatch functionality of SPM does not make the detective work straightforward. <o:p class=""></o:p></div>
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My first hunch would be that the (possibly hardcoded) definition of the eventtype/eventvalue is incorrect for your data. I checked the TAPAS code on github, and found the following function: <a href="https://urldefense.com/v3/__https:/github.com/translationalneuromodeling/tapas/blob/master/PhysIO/code/readin/tapas_physio_read_physlogfiles_brainproducts.m__;!!HJOPV4FYYWzcc1jazlU!5H90oiOLBBCjs7OHHJjplyfnTinW865-Zaby40nl4EbZ9Bda9wsf7NqLgE9m8mYrIAP9JANXm36nW5J0LyH6YNuL50-nLh9h6Ob8-w$" style="color: blue; text-decoration: underline;" class="">https://github.com/translationalneuromodeling/tapas/blob/master/PhysIO/code/readin/tapas_physio_read_physlogfiles_brainproducts.m</a> ,
which looks as if this is the one where things might go wrong. Specifically, starting from line 54 in said function, the eventvalue that defines the ’trials’ within PhysIO is defined hardcoded as ‘R128’, which does not seem to be present in your data.<o:p class=""></o:p></div>
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Could this be what is causing your issue? Given that the eventvalue is hardcoded (i.e. non configurable as an option in your matlabbatch) you can not get it to run without making a change to your version of the code. I would assume that - if this is indeed
the cause of the problem - the change of ‘R128’ into ‘R 1’ would be sufficient, and that this will work for all of your recorded subjects. A more principled solution would be to liaise with the PhysIO developers (or to submit a Pull Request) to discuss the
possibility of making the eventvalue for the brainproducts data configurable.<o:p class=""></o:p></div>
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If things are unclear, or on the off chance that my suggestions don’t address the problem, please feel free to drop by at the office (01.158) with some data, code and versnaperingen, so that we can have a look at it together.<o:p class=""></o:p></div>
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Best wishes,<o:p class=""></o:p></div>
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Jan-Mathijs<o:p class=""></o:p></div>
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On 9 Jun 2023, at 15:03, Evelyne Fraats via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>> wrote:<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Dear all,<o:p class=""></o:p></div>
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<span lang="EN-GB" class="">My name is Evelyne and I am just started to explore fieldtrip.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">I use fieldtrip to define trials in physiological recordings to estimate physiological regressors for MRI preprocessing.<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">However, when using the physio toolbox, no trials are detected within my data.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">When I run the separate ft_definetrial function, I get trials, but I seem to fail to include this in my matlabbatch.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">This is my output with error message:</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">evaluating trial function 'ft_trialfun_general'</span><o:p class=""></o:p></div>
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<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">reading the header from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p class=""></o:p></div>
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<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">reading the events from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">found 169 events</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">created 20 trials</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">the call to "ft_definetrial" took 0 seconds and required the additional allocation of an estimated 0 MB</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Item model: No field(s) named</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">event</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">------------------------------------------------------------------------</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">09-Jun-2023 15:02:40 - Running job #41</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">------------------------------------------------------------------------</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">09-Jun-2023 15:02:40 - Running 'TAPAS PhysIO Toolbox'</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Warning: cfg.trialdef.eventtype='?' is deprecated, please specify cfg.trialfun='ft_trialfun_show'<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">evaluating trial function 'ft_trialfun_show'</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">reading the events from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">the following events were found in the data</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">event type: 'New Segment'<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">with event values:<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">event type: 'Response'<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">with event values: 'R 1'<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">event type: 'Stimulus'<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">with event values: 'S 1' 'S 97'<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">no trials have been defined yet, see FT_DEFINETRIAL for further help</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">found 169 events</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">the call to "ft_definetrial" took 0 seconds and required the additional allocation of an estimated 0 MB</span><o:p class=""></o:p></div>
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<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">evaluating trial function 'ft_trialfun_general'</span><o:p class=""></o:p></div>
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<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">reading the header from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p class=""></o:p></div>
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<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">reading the events from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">09-Jun-2023 15:02:41 - Failed 'TAPAS PhysIO Toolbox'</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Error using ft_definetrial</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">no trials were defined, see FT_DEFINETRIAL for help</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">The following modules did not run:</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Failed: TAPAS PhysIO Toolbox</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Error using MATLABbatch system</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">exact #job as displayed in this error message)</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Running job #41</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">This is my code:</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">if physio_regressor == 1</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %cd /home/affneu/evefra/Spinalcord/data/Physio/<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %define log input</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> data_path_physio = fullfile(data_path, 'Physio');</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> data_path_physio_sub = dir(fullfile(data_path_physio, sprintf('subx%d*threat*.eeg', sub))) ; %CHANE FORMAT <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filenames = {data_path_physio_sub.name};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filenames = filenames'; <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filefolder = {data_path_physio_sub.folder};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filefolder = filefolder';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filename_folder = cellfun(@(folder, name) fullfile(folder, name), filefolder, filenames, 'UniformOutput', false);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %define vhdr</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> data_path_physio_sub = dir(fullfile(data_path_physio, sprintf('subx%d*threat*.vhdr', sub))) ; %CHANE FORMAT <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filenames = {data_path_physio_sub.name};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filenames = filenames'; <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filefolder = {data_path_physio_sub.folder};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filefolder = filefolder';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filename_folder_vhdr = cellfun(@(folder, name) fullfile(folder, name), filefolder, filenames, 'UniformOutput', false);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %define vmkr</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> data_path_physio_sub = dir(fullfile(data_path_physio, sprintf('subx%d*threat*.vmrk', sub))) ; %CHANE FORMAT <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filenames = {data_path_physio_sub.name};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filenames = filenames'; <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filefolder = {data_path_physio_sub.folder};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filefolder = filefolder';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> filename_folder_vmrk = cellfun(@(folder, name) fullfile(folder, name), filefolder, filenames, 'UniformOutput', false);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %define trials</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg = [];</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg.headerfile = char(filename_folder_vhdr);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg.eventfile = char(filename_folder_vmrk);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg.trialdef.eventtype = 'Stimulus'; <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg.trialdef.eventvalue = 'S 1'; <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg.trialdef.prestim = 0; <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> cfg.trialdef.poststim = 0;<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %cfg.trialfun = 'ft_trialfun_show';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> trials = ft_definetrial(cfg);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> %run regressor estimation</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> <span class="apple-converted-space"> </span></span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> clear matlabbatch</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.save_dir = {fullfile(data_path_tos_brain,'physio_regressors')};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.vendor = 'BrainProducts';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.cardiac = filename_folder;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.respiration = filename_folder;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.scan_timing = {''};</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.sampling_interval = [];</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.relative_start_acquisition = 0;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.log_files.align_scan = 'last';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Nslices = 44;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.NslicesPerBeat = [];</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.TR = 3.39;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Ndummies = 0;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Nscans = 147;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.onset_slice = 1;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.time_slice_to_slice = [];</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Nprep = [];</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.scan_timing.sync.nominal = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.cardiac.modality = 'ECG';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.cardiac.filter.no = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.cardiac.initial_cpulse_select.auto_matched.min = 0.4;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.cardiac.initial_cpulse_select.auto_matched.file = 'initial_cpulse_kRpeakfile.mat';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.cardiac.initial_cpulse_select.auto_matched.max_heart_rate_bpm = 90;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.cardiac.posthoc_cpulse_select.off = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.respiratory.filter.passband = [0.01 2];</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.preproc.respiratory.despike = false;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.output_multiple_regressors = 'multiple_regressors.txt';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.output_physio = 'physio.mat';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.orthogonalise = 'none';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.censor_unreliable_recording_intervals = false;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.retroicor.yes.order.c = 3;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.retroicor.yes.order.r = 4;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.retroicor.yes.order.cr = 1;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.rvt.no = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.hrv.no = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.noise_rois.no = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.movement.no = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.other.no = struct([]);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.verbose.level = 2;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.verbose.fig_output_file = '';</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.verbose.use_tabs = false;</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> matlabbatch{1}.spm.tools.physio.model.event.trials = trials.trl(:,1);</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> spm_jobman('run', matlabbatch)</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> end</span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""> </span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">If anybody has some tips, it would be greatly appreciated.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Best,<br class="">
Evelyne</span><o:p class=""></o:p></div>
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<span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">_______________________________________________<br class="">
fieldtrip mailing list<br class="">
</span><a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</span></a><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class=""><br class="">
</span><a href="https://urldefense.com/v3/__https:/doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!8K61M79uymMxxdjPKVyfGBtnWB-RCxy2i6Q6ZvuyiceE0VKbY6x6jPj7xtCmtq14ZNS3x6uHwZAy4xvdqZ3o72A8YRrwcTyAUBGzyA$" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">https://urldefense.com/v3/__https://doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!8K61M79uymMxxdjPKVyfGBtnWB-RCxy2i6Q6ZvuyiceE0VKbY6x6jPj7xtCmtq14ZNS3x6uHwZAy4xvdqZ3o72A8YRrwcTyAUBGzyA$</span></a><o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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<span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">_______________________________________________</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
<span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">fieldtrip
mailing list</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
<a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="color: blue; text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
<a href="https://urldefense.com/v3/__https://doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!8s-Z70UeatpelBHa9v69WauRDRUhTICCr1NzJSBcbg4jSvjWBkFbqfojgfeAzBHBb_M7bZD0FPNzbgP6e2QAwlnsQXaw0Ow8F_IrpQ$" style="color: blue; text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">https://urldefense.com/v3/__https://doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!8s-Z70UeatpelBHa9v69WauRDRUhTICCr1NzJSBcbg4jSvjWBkFbqfojgfeAzBHBb_M7bZD0FPNzbgP6e2QAwlnsQXaw0Ow8F_IrpQ$</a><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class=""></span></div>
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