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</o:shapelayout></xml><![endif]--></head><body lang=NL link=blue vlink=purple style='word-wrap:break-word'><div class=WordSection1><p class=MsoNormal><span style='mso-fareast-language:EN-US'>Dear all,<o:p></o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'>This was indeed the case!<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'>Within the tapas_physio_read_physlogfiles_brainproducts.m function, I could indeed define the event value.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'>Goodluck to you all.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'>Best,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'>Evelyne<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-GB style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b>Van:</b> fieldtrip <fieldtrip-bounces@science.ru.nl> <b>Namens </b>Schoffelen, J.M. (Jan Mathijs) via fieldtrip<br><b>Verzonden:</b> zaterdag 10 juni 2023 11:31<br><b>Aan:</b> FieldTrip discussion list <fieldtrip@science.ru.nl><br><b>CC:</b> Schoffelen, J.M. (Jan Mathijs) <janmathijs.schoffelen@donders.ru.nl><br><b>Onderwerp:</b> Re: [FieldTrip] trial error<o:p></o:p></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Dear Evelyne, <o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Hmmm, I think that your question is a bit out of scope for the fieldtrip discussion list, because your problem seems constrained to the a problem with the PhysIO toolbox (which uses SPM, which uses Fieldtrip). It’s great that you already have identified that calling ft_definetrial directly works fine, which makes it unlikely that there’s a bug in the fieldtrip codebase.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>I have never worked with this PhysIO toolbox myself, and the combination with the matlabbatch functionality of SPM does not make the detective work straightforward. <o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>My first hunch would be that the (possibly hardcoded) definition of the eventtype/eventvalue is incorrect for your data. I checked the TAPAS code on github, and found the following function: <a href="https://urldefense.com/v3/__https:/github.com/translationalneuromodeling/tapas/blob/master/PhysIO/code/readin/tapas_physio_read_physlogfiles_brainproducts.m__;!!HJOPV4FYYWzcc1jazlU!5H90oiOLBBCjs7OHHJjplyfnTinW865-Zaby40nl4EbZ9Bda9wsf7NqLgE9m8mYrIAP9JANXm36nW5J0LyH6YNuL50-nLh9h6Ob8-w$">https://github.com/translationalneuromodeling/tapas/blob/master/PhysIO/code/readin/tapas_physio_read_physlogfiles_brainproducts.m</a> , which looks as if this is the one where things might go wrong. Specifically, starting from line 54 in said function, the eventvalue that defines the ’trials’ within PhysIO is defined hardcoded as ‘R128’, which does not seem to be present in your data.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Could this be what is causing your issue? Given that the eventvalue is hardcoded (i.e. non configurable as an option in your matlabbatch) you can not get it to run without making a change to your version of the code. I would assume that - if this is indeed the cause of the problem - the change of ‘R128’ into ‘R 1’ would be sufficient, and that this will work for all of your recorded subjects. A more principled solution would be to liaise with the PhysIO developers (or to submit a Pull Request) to discuss the possibility of making the eventvalue for the brainproducts data configurable.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>If things are unclear, or on the off chance that my suggestions don’t address the problem, please feel free to drop by at the office (01.158) with some data, code and versnaperingen, so that we can have a look at it together.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Best wishes,<o:p></o:p></p></div><div><p class=MsoNormal>Jan-Mathijs<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><br><br><o:p></o:p></p><blockquote style='margin-top:5.0pt;margin-bottom:5.0pt'><div><p class=MsoNormal>On 9 Jun 2023, at 15:03, Evelyne Fraats via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>> wrote:<o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p><div><div><p class=MsoNormal>Dear all,<o:p></o:p></p></div><div><p class=MsoNormal> <o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>My name is Evelyne and I am just started to explore fieldtrip.</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>I use fieldtrip to define trials in physiological recordings to estimate physiological regressors for MRI preprocessing.<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>However, when using the physio toolbox, no trials are detected within my data.</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>When I run the separate ft_definetrial function, I get trials, but I seem to fail to include this in my matlabbatch.</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>This is my output with error message:</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>evaluating trial function 'ft_trialfun_general'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>reading the header from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>reading the events from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>found 169 events</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>created 20 trials</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>the call to "ft_definetrial" took 0 seconds and required the additional allocation of an estimated 0 MB</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Item model: No field(s) named</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>event</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>------------------------------------------------------------------------</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>09-Jun-2023 15:02:40 - Running job #41</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>------------------------------------------------------------------------</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>09-Jun-2023 15:02:40 - Running 'TAPAS PhysIO Toolbox'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Warning: cfg.trialdef.eventtype='?' is deprecated, please specify cfg.trialfun='ft_trialfun_show'<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>evaluating trial function 'ft_trialfun_show'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>reading the events from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>the following events were found in the data</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>event type: 'New Segment'<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>with event values:<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>event type: 'Response'<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>with event values: 'R 1'<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>event type: 'Stimulus'<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>with event values: 'S 1' 'S 97'<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>no trials have been defined yet, see FT_DEFINETRIAL for further help</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>found 169 events</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>the call to "ft_definetrial" took 0 seconds and required the additional allocation of an estimated 0 MB</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>evaluating trial function 'ft_trialfun_general'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>reading the header from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>reading the events from '/home/affneu/evefra/Spinalcord/data/Physio/subx19_new_threat_SPINAL.vhdr'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>09-Jun-2023 15:02:41 - Failed 'TAPAS PhysIO Toolbox'</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Error using ft_definetrial</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>no trials were defined, see FT_DEFINETRIAL for help</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>The following modules did not run:</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Failed: TAPAS PhysIO Toolbox</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Error using MATLABbatch system</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>exact #job as displayed in this error message)</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>------------------</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Running job #41</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>------------------</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>This is my code:</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>if physio_regressor == 1</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %cd /home/affneu/evefra/Spinalcord/data/Physio/<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %define log input</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> data_path_physio = fullfile(data_path, 'Physio');</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> data_path_physio_sub = dir(fullfile(data_path_physio, sprintf('subx%d*threat*.eeg', sub))) ; %CHANE FORMAT <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filenames = {data_path_physio_sub.name};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filenames = filenames'; <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filefolder = {data_path_physio_sub.folder};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filefolder = filefolder';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filename_folder = cellfun(@(folder, name) fullfile(folder, name), filefolder, filenames, 'UniformOutput', false);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %define vhdr</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> data_path_physio_sub = dir(fullfile(data_path_physio, sprintf('subx%d*threat*.vhdr', sub))) ; %CHANE FORMAT <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filenames = {data_path_physio_sub.name};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filenames = filenames'; <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filefolder = {data_path_physio_sub.folder};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filefolder = filefolder';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filename_folder_vhdr = cellfun(@(folder, name) fullfile(folder, name), filefolder, filenames, 'UniformOutput', false);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %define vmkr</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> data_path_physio_sub = dir(fullfile(data_path_physio, sprintf('subx%d*threat*.vmrk', sub))) ; %CHANE FORMAT <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filenames = {data_path_physio_sub.name};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filenames = filenames'; <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filefolder = {data_path_physio_sub.folder};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filefolder = filefolder';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> filename_folder_vmrk = cellfun(@(folder, name) fullfile(folder, name), filefolder, filenames, 'UniformOutput', false);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %define trials</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg = [];</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg.headerfile = char(filename_folder_vhdr);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg.eventfile = char(filename_folder_vmrk);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg.trialdef.eventtype = 'Stimulus'; <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg.trialdef.eventvalue = 'S 1'; <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg.trialdef.prestim = 0; <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> cfg.trialdef.poststim = 0;<span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %cfg.trialfun = 'ft_trialfun_show';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> trials = ft_definetrial(cfg);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> %run regressor estimation</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> <span class=apple-converted-space> </span></span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> clear matlabbatch</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.save_dir = {fullfile(data_path_tos_brain,'physio_regressors')};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.vendor = 'BrainProducts';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.cardiac = filename_folder;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.respiration = filename_folder;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.scan_timing = {''};</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.sampling_interval = [];</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.relative_start_acquisition = 0;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.log_files.align_scan = 'last';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Nslices = 44;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.NslicesPerBeat = [];</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.TR = 3.39;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Ndummies = 0;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Nscans = 147;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.onset_slice = 1;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.time_slice_to_slice = [];</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sqpar.Nprep = [];</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.scan_timing.sync.nominal = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.cardiac.modality = 'ECG';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.cardiac.filter.no = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.cardiac.initial_cpulse_select.auto_matched.min = 0.4;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.cardiac.initial_cpulse_select.auto_matched.file = 'initial_cpulse_kRpeakfile.mat';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.cardiac.initial_cpulse_select.auto_matched.max_heart_rate_bpm = 90;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.cardiac.posthoc_cpulse_select.off = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.respiratory.filter.passband = [0.01 2];</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.preproc.respiratory.despike = false;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.output_multiple_regressors = 'multiple_regressors.txt';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.output_physio = 'physio.mat';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.orthogonalise = 'none';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.censor_unreliable_recording_intervals = false;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.retroicor.yes.order.c = 3;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.retroicor.yes.order.r = 4;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.retroicor.yes.order.cr = 1;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.rvt.no = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.hrv.no = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.noise_rois.no = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.movement.no = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.other.no = struct([]);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.verbose.level = 2;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.verbose.fig_output_file = '';</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.verbose.use_tabs = false;</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> matlabbatch{1}.spm.tools.physio.model.event.trials = trials.trl(:,1);</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> spm_jobman('run', matlabbatch)</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> end</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB> </span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>If anybody has some tips, it would be greatly appreciated.</span><o:p></o:p></p></div><div><p class=MsoNormal><span lang=EN-GB>Best,<br>Evelyne</span><o:p></o:p></p></div><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Helvetica",sans-serif'>_______________________________________________<br>fieldtrip mailing list<br></span><a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip"><span style='font-size:10.5pt;font-family:"Helvetica",sans-serif'>https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</span></a><span style='font-size:10.5pt;font-family:"Helvetica",sans-serif'><br></span><a href="https://urldefense.com/v3/__https:/doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!8K61M79uymMxxdjPKVyfGBtnWB-RCxy2i6Q6ZvuyiceE0VKbY6x6jPj7xtCmtq14ZNS3x6uHwZAy4xvdqZ3o72A8YRrwcTyAUBGzyA$"><span style='font-size:10.5pt;font-family:"Helvetica",sans-serif'>https://urldefense.com/v3/__https://doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!8K61M79uymMxxdjPKVyfGBtnWB-RCxy2i6Q6ZvuyiceE0VKbY6x6jPj7xtCmtq14ZNS3x6uHwZAy4xvdqZ3o72A8YRrwcTyAUBGzyA$</span></a><o:p></o:p></p></div></blockquote></div><p class=MsoNormal><o:p> </o:p></p></div></div></body></html>