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<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">Dear Fieldtrip experts,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">I would like to ask a question on the implementation of an EEG analysis.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">I would like to implement a model where 20 subjects perform a task with 9 conditions, each of them contains a certain number of trials (10 or 5).<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">My datafile contains the power spectrum from 10(repetitions)x118(electrodes)x32(frequencyBins).<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">I am interested in the main effects of condition, but I would like to regress out the performance on each single trial.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">I implemented a model, where I use the average across trials, and I attach here the code. Basically the code uses:<o:p></o:p></span></p>
<ul style="margin-top:0cm" type="disc">
<li class="MsoListParagraph" style="margin-left:0cm;mso-list:l2 level1 lfo3"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.method =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'montecarlo'</span><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p></o:p></span></li><li class="MsoListParagraph" style="margin-left:0cm;mso-list:l2 level1 lfo3"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.statistic =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'depsamplesFmultivariate'</span><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p></o:p></span></li><li class="MsoListParagraph" style="margin-left:0cm;mso-list:l2 level1 lfo3"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.correctm =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'cluster'</span><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p></o:p></span></li></ul>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">I now have two questions:<o:p></o:p></span></p>
<ol style="margin-top:0cm" start="1" type="1">
<li class="MsoListParagraph" style="margin-left:0cm;mso-list:l1 level1 lfo2"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">Is it correct that the variable to regress out (the performance in my case) is identified as the
<b>cfg.cvar</b>?<o:p></o:p></span></li><li class="MsoListParagraph" style="margin-left:0cm;mso-list:l1 level1 lfo2"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">Could you please advice on how to implement the overall model, where each single repetition is included?<o:p></o:p></span></li></ol>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">Here is my code so far:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg = [];</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.neighbours = myClusters;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.channel =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'all'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.parameter =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'powspctrm'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.method =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'montecarlo'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.statistic =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'depsamplesFmultivariate'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.alpha = 0.05;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.tail = 1;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.correctm =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'cluster'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.correcttail =
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#AA04F9">'alpha'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black"></span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.numrandomization = 10000;</span><span style="font-size:10.0pt;font-family:"Courier New";color:#028009">%'all';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:#028009"></span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:#028009"> </span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">nSub = length(freq);</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black"></span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:#028009">% Specify design matrix</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.design(1,1:9*nSub) = [1:nSub 1:nSub 1:nSub 1:nSub 1:nSub 1:nSub 1:nSub 1:nSub 1:nSub];</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.design(2,1:9*nSub) = [ones(1,nSub) 2*ones(1,nSub) 3*ones(1,nSub) 4*ones(1,nSub) 5*ones(1,nSub)
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#0E00FF">...</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black"> 6*ones(1,nSub) 7*ones(1,nSub) 8*ones(1,nSub) 9*ones(1,nSub)];</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.design(3,1:9*nSub) = [meanJoA(:,9)' meanJoA(:,8)' meanJoA(:,7)' meanJoA(:,6)' meanJoA(:,5)'
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#0E00FF">...</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black"> meanJoA(:,4)' meanJoA(:,3)' meanJoA(:,2)' meanJoA(:,1)'];</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black"></span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.uvar = 1;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.ivar = 2;
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#028009">% the independent variable</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cfg.cvar = 3;</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black"></span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond1 = freq(:,1)';
</span><span style="font-size:10.0pt;font-family:"Courier New";color:#028009">% this is my 100% of control
</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond2 = freq(:,2)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond3 = freq(:,3)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond4 = freq(:,4)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond5 = freq(:,5)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond6 = freq(:,6)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond7 = freq(:,7)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond8 = freq(:,8)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">cond9 = freq(:,9)';</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">stat = ft_freqstatistics(cfg, cond9{:},cond8{:},cond7{:},cond6{:},cond5{:},cond4{:},cond3{:},cond2{:},cond1{:});</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:12.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">Thank you very much,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:10.0pt;font-family:"Arial",sans-serif">Giuseppe<o:p></o:p></span></p>
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<b><span lang="EN-GB" style="font-size:12.0pt;font-family:"Arial",sans-serif;color:black;mso-fareast-language:EN-GB">Dr. Giuseppe Angelo Zito</span></b><span lang="EN-GB" style="font-size:12.0pt;font-family:"Arial",sans-serif;color:#222222;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
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<span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">Principal Investigator, Swiss National Science Foundation<o:p></o:p></span></p>
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<span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
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<span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">Decision Neuroscience Lab<o:p></o:p></span></p>
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<span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">Department of Health Sciences and Technology (D-HEST)<o:p></o:p></span></p>
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<span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">ETH – Swiss Federal Institute of Technology Zurich<o:p></o:p></span></p>
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<span lang="FR-CH" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
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<span lang="FR-CH" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">Winterthurerstrasse 190<o:p></o:p></span></p>
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<span lang="FR-CH" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">8057 Zürich
<o:p></o:p></span></p>
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<span lang="FR-CH" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:EN-GB">Switzerland<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.5pt;font-family:"Arial",sans-serif;mso-fareast-language:#1000"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:#1000">Tel: +41 44 633 05 17<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:9.5pt;font-family:"Arial",sans-serif;color:#595959;mso-fareast-language:#1000">mailto: giuseppeangelo.zito@hest.ethz.ch<o:p></o:p></span></p>
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