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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Hello Kyla,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">I think your code contains two errors. 1) The addpath function is not needed, just the text string. 2) there is a file separator missing between the path and filename. So end your path with a “/”.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="gmail-p2" style="margin:0cm"><span style="mso-fareast-language:EN-US">Your code line would look like this:
</span><span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">filepath =
</span></span><span style="font-size:7.5pt;font-family:"Courier New";color:#AA04F9">'/Users/kmgm/Library/Application Support/MathWorks/MATLAB Add-Ons/Collections/FieldTrip/'</span><span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">;</span></span><span style="font-size:7.5pt;color:#AA04F9"><o:p></o:p></span></p>
<p class="MsoNormal" style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;min-height:12px">
<span style="mso-fareast-language:EN-US">Is this the folder where your datafile (Pilot010.bdf) is stored?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Xavier<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">Kyla Malayang <kylam@mun.ca><br>
<b>Date: </b>Thursday, 30 September 2021 at 1:21 AM<br>
<b>To: </b>Xavier Vrijdag <x.vrijdag@auckland.ac.nz><br>
<b>Subject: </b>Re: [FieldTrip] Reading in .bdf data into FieldTrip<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">Hi Xavier,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial",sans-serif"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">Thank you so much. I ran that code, but it gave an error stating: <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Courier New"">Error in ft_preprocessing (line 404)</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Courier New"">hdr = ft_read_header(cfg.headerfile, headeropt{:});</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<div>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">This was the code I ran: <o:p></o:p></span></p>
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<p class="gmail-p1" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New";color:#028009">%----------------------------------------------------------Before beginning</span><span style="font-size:7.5pt;color:#028009"><o:p></o:p></span></p>
<p class="gmail-p2" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">clear
</span></span><span style="font-size:7.5pt;font-family:"Courier New";color:#AA04F9">variables</span><span style="font-size:7.5pt;color:#AA04F9"><o:p></o:p></span></p>
<p class="gmail-p2" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">filepath = addpath(</span></span><span style="font-size:7.5pt;font-family:"Courier New";color:#AA04F9">'/Users/kmgm/Library/Application Support/MathWorks/MATLAB Add-Ons/Collections/FieldTrip'</span><span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">);</span></span><span style="font-size:7.5pt;color:#AA04F9"><o:p></o:p></span></p>
<p class="gmail-p3" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;min-height:12px">
<span class="gmail-apple-converted-space"><span style="font-size:7.5pt;font-family:"Courier New""> </span></span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<p class="gmail-p2" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">filename =
</span></span><span style="font-size:7.5pt;font-family:"Courier New";color:#AA04F9">'Pilot010.bdf'</span><span class="gmail-s1"><span style="font-size:7.5pt;font-family:"Courier New";color:black">;</span></span><span style="font-size:7.5pt;color:#AA04F9"><o:p></o:p></span></p>
<p class="gmail-p4" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New"">cfg.dataset = [filepath filename];</span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<p class="gmail-p4" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New"">cfg.channel = 1:64;</span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<p class="gmail-p4" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New"">cfg.reref = <span class="gmail-s2">
<span style="color:#AA04F9">'yes'</span></span>;</span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<p class="gmail-p4" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New"">cfg.refchannel = <span class="gmail-s2">
<span style="color:#AA04F9">'EEG'</span></span>; <span class="gmail-apple-converted-space">
</span><span class="gmail-s3"><span style="color:#028009">%Average of all EEG channels</span></span></span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<p class="gmail-p4" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New"">cfg.demean = <span class="gmail-s2">
<span style="color:#AA04F9">'yes'</span></span>;</span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<p class="gmail-p4" style="margin:0cm;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal">
<span style="font-size:7.5pt;font-family:"Courier New"">cfg.detrend = <span class="gmail-s2">
<span style="color:#AA04F9">'yes'</span></span>;</span><span style="font-size:7.5pt"><o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span style="font-size:7.5pt;font-family:"Courier New"">data = ft_preprocessing(cfg);</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<div>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">When I run the ft_read_header function, it tells me the header is "unknown". Can you please help me with this?
<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<div>
<p class="MsoNormal">On Wed, Sep 29, 2021 at 1:21 AM Xavier Vrijdag via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>> wrote:<o:p></o:p></p>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0cm 0cm 0cm 6.0pt;margin-left:4.8pt;margin-right:0cm">
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hello Kyla,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I use a BioSemi system as well. I import my bdf data with higher-level Fieldtrip functions, see the example below. You can also find additional information on the fieldtrip website:
<a href="https://www.fieldtriptoolbox.org/getting_started/biosemi/" target="_blank">
https://www.fieldtriptoolbox.org/getting_started/biosemi/</a> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="gmail-m-1731448368343023633p1"><span class="gmail-m-1731448368343023633apple-converted-space">
</span>cfg.dataset = [filepath filename];<o:p></o:p></p>
<p class="gmail-m-1731448368343023633p1"><span class="gmail-m-1731448368343023633apple-converted-space">
</span>cfg.channel<span class="gmail-m-1731448368343023633apple-converted-space">
</span>= 1:34;<o:p></o:p></p>
<p class="gmail-m-1731448368343023633p1"><span class="gmail-m-1731448368343023633apple-converted-space">
</span>cfg.reref<span class="gmail-m-1731448368343023633apple-converted-space">
</span>= <span class="gmail-m-1731448368343023633s1">'yes'</span>;<o:p></o:p></p>
<p class="gmail-m-1731448368343023633p2"><span class="gmail-m-1731448368343023633apple-converted-space"><span style="color:black">
</span></span><span class="gmail-m-1731448368343023633s2">cfg.refchannel = </span>
<span class="gmail-m-1731448368343023633s1">'EEG'</span><span class="gmail-m-1731448368343023633s2">;
</span>% average of all EEG channels<o:p></o:p></p>
<p class="gmail-m-1731448368343023633p1"><span class="gmail-m-1731448368343023633apple-converted-space">
</span>cfg.demean <span class="gmail-m-1731448368343023633apple-converted-space">
</span>= <span class="gmail-m-1731448368343023633s1">'yes'</span>;<o:p></o:p></p>
<p class="gmail-m-1731448368343023633p1"><span class="gmail-m-1731448368343023633apple-converted-space">
</span>cfg.detrend<span class="gmail-m-1731448368343023633apple-converted-space">
</span>= <span class="gmail-m-1731448368343023633s1">'yes'</span>;<o:p></o:p></p>
<p class="gmail-m-1731448368343023633p1"><span class="gmail-m-1731448368343023633apple-converted-space">
</span>data = ft_preprocessing(cfg);<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">regards,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Xavier<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;color:#595555">Xavier Vrijdag, MSc</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:5.0pt;color:black"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;color:#006060">Research fellow</span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;color:#595555">Department of Anaesthesiology </span><span style="font-size:10.0pt;color:#006060">│</span><span style="font-size:10.0pt;color:black"> </span><span style="font-size:10.0pt;color:#595555">School
of Medicine</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;color:#595555">Faculty of Medical & Health Sciences </span><span style="font-size:10.0pt;color:#006060">│</span><span style="font-size:10.0pt;color:black"> </span><span style="font-size:10.0pt;color:#595555">The
University of Auckland</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;color:#595555">Private Bag 92019 </span><span style="font-size:10.0pt;color:#006060">│</span><span style="font-size:10.0pt;color:black"> </span><span style="font-size:10.0pt;color:#595555">Auckland
1142 </span><span style="font-size:10.0pt;color:#006060">│</span><span style="font-size:10.0pt;color:black"> </span><span style="font-size:10.0pt;color:#595555">New Zealand</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;color:black"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;color:#006060">M</span></b><span style="font-size:10.0pt;color:black"> </span><span style="font-size:10.0pt;color:#595555">+64 21 0230 4558</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;color:#006060">E </span></b><span style="font-size:10.0pt;color:#006060"><a href="mailto:x.vrijdag@auckland.ac.nz" target="_blank"><span style="color:#044A91">x.vrijdag@auckland.ac.nz</span></a><b> </b></span><b><span style="font-size:8.0pt;font-family:"Verdana",sans-serif;color:black"> </span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:8.0pt;font-family:"Verdana",sans-serif;color:black"><img border="0" width="315" height="48" style="width:3.2812in;height:.5in" id="gmail-m_-1731448368343023633Picture_x0020_1" src="cid:image001.png@01D7B5F8.7181AE40" alt="FMHS Logo"></span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" target="_blank">fieldtrip-bounces@science.ru.nl</a>> on behalf of Kyla Malayang via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" target="_blank">fieldtrip@science.ru.nl</a>><br>
<b>Reply to: </b>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" target="_blank">fieldtrip@science.ru.nl</a>><br>
<b>Date: </b>Wednesday, 29 September 2021 at 2:30 AM<br>
<b>To: </b>"<a href="mailto:fieldtrip@science.ru.nl" target="_blank">fieldtrip@science.ru.nl</a>" <<a href="mailto:fieldtrip@science.ru.nl" target="_blank">fieldtrip@science.ru.nl</a>><br>
<b>Cc: </b>Kyla Malayang <<a href="mailto:kylam@mun.ca" target="_blank">kylam@mun.ca</a>><br>
<b>Subject: </b>[FieldTrip] Reading in .bdf data into FieldTrip</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">Hello,</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Arial",sans-serif"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">I'm trying to load data with a .bdf file extension into Matlab. I have the FieldTrip installed and added to my path.
However, when I try reading in the data using the ft_read_data function, I receive an error message of "unsupported header format "unknown".</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Arial",sans-serif"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Arial",sans-serif">The data are continuous EEG data recorded from BioSemi in ActiView.</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">--
<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:"Arial",sans-serif">Sincerely,</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:"Arial",sans-serif">Kyla </span><o:p></o:p></p>
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<p class="MsoNormal">_______________________________________________<br>
fieldtrip mailing list<br>
<a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
<a href="https://doi.org/10.1371/journal.pcbi.1002202" target="_blank">https://doi.org/10.1371/journal.pcbi.1002202</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">-- <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Sincerely,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Kyla </span><o:p></o:p></p>
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