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Sorry this message went into my clutter, thank you Jan Mathijs I will look to see if the ft_checkconfig is there in the version of FT I use</div>
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Best</div>
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Umesh</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> fieldtrip <fieldtrip-bounces@science.ru.nl> on behalf of Schoffelen, J.M. (Jan Mathijs) via fieldtrip <fieldtrip@science.ru.nl><br>
<b>Sent:</b> 17 June 2021 06:50<br>
<b>To:</b> FieldTrip discussion list <fieldtrip@science.ru.nl><br>
<b>Cc:</b> Schoffelen, J.M. (Jan Mathijs) <janmathijs.schoffelen@donders.ru.nl><br>
<b>Subject:</b> Re: [FieldTrip] Using ft_crossfrequencyanalysis</font>
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<div class="">Umesh,</div>
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<div class="">Thanks for your message. But unfortunately, things have not been clarified.</div>
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<div class="">What we do know now, is that you get a warning, not an error.</div>
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<div class="">Then my question is still: What function, and what line in the function is throwing the warning? </div>
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<div class="">I suspect that the version of the function you are using has a call to ft_checkconfig(cfg, ‘forbidden’, {‘chanlow’ ‘chanhigh’})</div>
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<div class="">My (i.e. today’s) version of the function does not have this line. From the revision history I can see that the last change predates the date of the version that you mention (20210413), and even without this change the potential culprit function
call was not there. I therefore suspect that you are using an older version, which could contain a bug.</div>
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<div class="">Please ensure that you are using a sufficiently recent version of the code (this might be even already achieved by cleaning your matlab path) and try again.</div>
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<div class="">Best wishes,</div>
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<div class="">Jan-Mathijs</div>
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<blockquote type="cite" class="">
<div class="">On 16 Jun 2021, at 21:32, Vivekananda, Umesh <<a href="mailto:u.vivekananda@ucl.ac.uk" class="">u.vivekananda@ucl.ac.uk</a>> wrote:</div>
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Hi Jan-Mathijs</div>
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Apologies Ill explain a bit more. Im trying to look at hippocampal - prefrontal coupling. I am using intracranial EEG data. The exact error in yellow is this 'Warning: The field cfg.chanlow is forbidden, it will be removed from your configuration<br class="">
The field cfg.chanhigh is forbidden, it will be removed from your configuration'</div>
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It is thrown when i perform the CFC command (in red)</div>
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<span class="" style="font-size:12pt">cfg.method</span><span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">=<span class="x_Apple-converted-space"> </span></span><span class="x_s1" style="color:rgb(160,32,240); font-size:12pt">'plv'</span><span class="" style="font-size:12pt">;</span></div>
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<span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">cfg.keeptrials</span><span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">=
keepTrials;</span></div>
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<span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">cfg.chanlow<span class="x_Apple-converted-space"> </span></span><span class="x_Apple-converted-space" style="font-size:12pt">
</span><span class="" style="font-size:12pt">= cueHPCPower.label; %an individual hippocampal channel</span></div>
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<span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">cfg.chanhigh</span><span class="x_Apple-converted-space" style="font-size:12pt"> </span><span class="" style="font-size:12pt">=
cuePFCPower.label; %an individual prefrontal channel</span></div>
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<span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">cfg.freqlow<span class="x_Apple-converted-space"> </span></span><span class="x_Apple-converted-space" style="font-size:12pt">
</span><span class="" style="font-size:12pt">= phaseBand; </span></div>
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<span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">cfg.freqhigh</span><span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-size:12pt">=
ampBand;</span></div>
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<span class="x_Apple-converted-space" style="font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="x_Apple-converted-space" style="color:rgb(200,38,19); font-size:12pt"> <span class="x_Apple-converted-space"> </span></span><span class="" style="color:rgb(200,38,19); font-size:12pt">CFC<span class="x_Apple-converted-space"> </span></span><span class="x_Apple-converted-space" style="color:rgb(200,38,19); font-size:12pt">
</span><span class="" style="color:rgb(200,38,19); font-size:12pt">= ft_crossfrequencyanalysis(cfg,cueHPCPower,cuePFCPower);</span></div>
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<span class="" style="font-size:12pt">As a result the output of the CFC command does not ascribe a channel, and the crsspctrm is not calculated looking a bit like</span></div>
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<span class="" style="font-size:12pt">label 0x1 cell</span></div>
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<span class="" style="font-size:12pt">crsspctrm []</span></div>
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</span></div>
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<span class="" style="font-size:12pt">Im currently using fieldtrip-20210413 (which I downloaded for the excellent course Donders did!)</span></div>
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<span class="" style="font-size:12pt">I hope that makes more sense</span></div>
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<span class="" style="font-size:12pt">Many thanks</span></div>
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<span class="" style="font-size:12pt">Umesh</span></div>
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<font face="Calibri, sans-serif" class="" style="font-size:11pt"><b class="">From:</b><span class="x_Apple-converted-space"> </span>fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" class="">fieldtrip-bounces@science.ru.nl</a>> on behalf of Schoffelen,
J.M. (Jan Mathijs) via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Sent:</b><span class="x_Apple-converted-space"> </span>16 June 2021 19:24<br class="">
<b class="">To:</b><span class="x_Apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Cc:</b><span class="x_Apple-converted-space"> </span>Schoffelen, J.M. (Jan Mathijs) <<a href="mailto:janmathijs.schoffelen@donders.ru.nl" class="">janmathijs.schoffelen@donders.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="x_Apple-converted-space"> </span>Re: [FieldTrip] Using ft_crossfrequencyanalysis</font>
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<span class="" style="">Hi Umesh,</span>
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<div class="" style="">What was the error? '<span class="" style="font-size:11pt">cfg.chanlow and cfg.chanhigh were forbidden variables</span><span class="" style="font-size:14.666666984558105px">’</span><span class="" style="font-size:11pt">?</span></div>
<div class="" style=""><span class="" style="font-size:14.666666984558105px"><br class="">
</span></div>
<div class="" style=""><span class="" style="font-size:14.666666984558105px">Please paste the complete error as you get it on the screen, as well as the stack (i.e. the line at which the error is thrown).</span></div>
<div class="" style=""><span class="" style="font-size:14.666666984558105px">Also, what is the version of FieldTrip you have been using?</span></div>
<div class="" style=""><span class="" style="font-size:14.666666984558105px"><br class="">
</span></div>
<div class="" style=""><span class="" style="font-size:14.666666984558105px">We need a little bit more information to be able to think along.</span></div>
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<div class="" style=""><span class="" style="font-size:14.666666984558105px">Good luck,</span></div>
<div class="" style=""><span class="" style="font-size:14.666666984558105px">Jan-Mathijs</span></div>
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<blockquote type="cite" class="">
<div class="">On 16 Jun 2021, at 17:38, Vivekananda, Umesh via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>> wrote:</div>
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Dear team</div>
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I have used this function in the past successfully when considering within channel analysis. However when I used the function again but across channels like so</div>
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cfg.method<span class="x_x_Apple-converted-space"> <span class="x_x_Apple-converted-space"> </span></span>=<span class="x_x_Apple-converted-space"> </span><span class="x_x_s1" style="color:rgb(160,32,240)">'plv'</span>;</div>
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<span class="" style="font-family:Helvetica; font-size:10px; font-style:normal; font-variant-ligatures:normal; font-variant-caps:normal; font-weight:normal">cfg.keeptrials</span><span class="x_x_Apple-converted-space" style="font-family:Helvetica; font-size:10px; font-style:normal; font-variant-ligatures:normal; font-variant-caps:normal; font-weight:normal"> <span class="x_x_Apple-converted-space"> </span></span><span class="" style="font-family:Helvetica; font-size:10px; font-style:normal; font-variant-ligatures:normal; font-variant-caps:normal; font-weight:normal">=
keepTrials;</span></div>
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cfg.chanlow<span class="x_x_Apple-converted-space"> </span><span class="x_x_Apple-converted-space"> <span class="x_x_Apple-converted-space"> </span></span>= cueHPCPower.label;</div>
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cfg.chanhigh<span class="x_x_Apple-converted-space"> <span class="x_x_Apple-converted-space"> </span></span>= cuePFCPower.label;</div>
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cfg.freqlow<span class="x_x_Apple-converted-space"> </span><span class="x_x_Apple-converted-space"> <span class="x_x_Apple-converted-space"> </span></span>= phaseBand;</div>
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cfg.freqhigh<span class="x_x_Apple-converted-space"> <span class="x_x_Apple-converted-space"> </span></span>= ampBand;</div>
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CFC<span class="x_x_Apple-converted-space"> </span><span class="x_x_Apple-converted-space"> <span class="x_x_Apple-converted-space"> </span></span>= ft_crossfrequencyanalysis(cfg,cueHPCPower,cuePFCPower);</div>
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<span class="" style="font-size:11pt">I got an error stating cfg.chanlow and cfg.chanhigh were forbidden variables. I had derived a fourier spectrum for HPC and PFC channel separately in order to compute individual channel CFC before averaging. Any help would
be much appreciated</span></div>
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<span class="" style="font-size:11pt">Thanks</span></div>
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<span class="" style="font-size:11pt">Umesh </span><br class="">
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