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Hi Sara,
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<div class="">We don’t work with this type of file regularly. The last time I looked into this is actually one year ago judging from the thread on the discussion list that you probably are referring to.</div>
<div class="">The ‘fix’ I made back then was in order to address the error for the problematic file that was shared with us. Apparently, your problematic files have problems of a different nature.</div>
<div class="">So, I guess that the code is still not robust enough - that is, it still has too strong expectations with respect to the exact content of the files which are not always met - in order to deal with .obj files.</div>
<div class="">Could you share perhaps one of those problematic scans with us so that we can have a look, and file an issue about this on github:
<a href="https://github.com/fieldtrip/fieldtrip/issues" class="">https://github.com/fieldtrip/fieldtrip/issues</a> ?</div>
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<div class="">Best wishes,</div>
<div class="">Jan-Mathijs</div>
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<blockquote type="cite" class="">
<div class="">On 5 Jul 2021, at 23:20, Sanchez-alonso, Sara via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>> wrote:</div>
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<span lang="ES" class="">Dear FieldTrip Community,<o:p class=""></o:p></span></div>
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<span lang="ES" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
I am trying to localize NIRS optodes using a 3D structure sensor (specifically Structure Sensor Mark II,<span class="Apple-converted-space"> </span><a href="https://urldefense.com/v3/__https://structure.io/structure-sensor__;!!HJOPV4FYYWzcc1jazlU!oKxS2tdwZebhas2ILvjRKCBItYb-0xMiFBgejMBEkUCih1Slyx64ZkON7BjUsUNu9Phlavl7-M2M9Jc$" class="">https://structure.io/structure-sensor</a>).
I have been following the FieldTrip scanner tutorial, which seems to work with most of my scans (20 scans in total), but not for a subset (7 scans). When I try to load the data for this subset of scans, I get an error in the refine function:<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Error using refine (line 72)<o:p class=""></o:p></div>
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invalid size of texture<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Error in ft_read_headshape (line 1030)<o:p class=""></o:p></div>
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[shape.pos, shape.tri, texture] = refine(shape.pos, shape.tri,...<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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<o:p class=""> </o:p></div>
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Searching through the discussion list, I saw that someone run into a similar error about a year ago, which was caused by the assumptions that FieldTrip makes about the content of the obj-file. It seems that this issue had been solved, so I wonder whether this
is due to a similar or new issue.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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I am using fieldtrip-20210629 and jpg as image file.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Any help would be much appreciated. Thanks in advance.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Best,<o:p class=""></o:p></div>
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Sara <o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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<span lang="ES" style="font-size: 10pt;" class="">-- <o:p class=""></o:p></span></div>
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<b class=""><span lang="ES" style="font-size: 10pt;" class="">Sara Sanchez-Alonso, Ph.D.<o:p class=""></o:p></span></b></div>
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<span style="font-size: 10pt;" class="">Postdoctoral Associate<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class=""><a href="https://urldefense.com/v3/__https://llamblab.haskins.yale.edu/__;!!HJOPV4FYYWzcc1jazlU!oKxS2tdwZebhas2ILvjRKCBItYb-0xMiFBgejMBEkUCih1Slyx64ZkON7BjUsUNu9Phlavl7PPcFaTw$" class=""><span style="color: rgb(5, 99, 193);" class="">Language
Learning and Multisensory Brain Lab</span></a><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class=""><a href="https://urldefense.com/v3/__https://haskinslabs.org/__;!!HJOPV4FYYWzcc1jazlU!oKxS2tdwZebhas2ILvjRKCBItYb-0xMiFBgejMBEkUCih1Slyx64ZkON7BjUsUNu9Phlavl7DIIi61E$" class=""><span style="color: rgb(5, 99, 193);" class="">Haskins
Laboratories</span></a><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class="">300 George Street, Suite 900<o:p class=""></o:p></span></div>
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