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<div class="">Umesh,</div>
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<div class="">Thanks for your message. But unfortunately, things have not been clarified.</div>
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<div class="">What we do know now, is that you get a warning, not an error.</div>
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<div class="">Then my question is still: What function, and what line in the function is throwing the warning? </div>
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<div class="">I suspect that the version of the function you are using has a call to ft_checkconfig(cfg, ‘forbidden’, {‘chanlow’ ‘chanhigh’})</div>
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<div class="">My (i.e. today’s) version of the function does not have this line. From the revision history I can see that the last change predates the date of the version that you mention (20210413), and even without this change the potential culprit function
call was not there. I therefore suspect that you are using an older version, which could contain a bug.</div>
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<div class="">Please ensure that you are using a sufficiently recent version of the code (this might be even already achieved by cleaning your matlab path) and try again.</div>
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<div class="">Best wishes,</div>
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<div class="">Jan-Mathijs</div>
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<blockquote type="cite" class="">
<div class="">On 16 Jun 2021, at 21:32, Vivekananda, Umesh <<a href="mailto:u.vivekananda@ucl.ac.uk" class="">u.vivekananda@ucl.ac.uk</a>> wrote:</div>
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Hi Jan-Mathijs</div>
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Apologies Ill explain a bit more. Im trying to look at hippocampal - prefrontal coupling. I am using intracranial EEG data. The exact error in yellow is this 'Warning: The field cfg.chanlow is forbidden, it will be removed from your configuration<br class="">
The field cfg.chanhigh is forbidden, it will be removed from your configuration'</div>
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It is thrown when i perform the CFC command (in red)</div>
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<span style="font-size: 12pt;" class="">cfg.method</span><span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">=<span class="Apple-converted-space"> </span></span><span class="s1" style="color: rgb(160, 32, 240); font-size: 12pt;">'plv'</span><span style="font-size: 12pt;" class="">;</span></div>
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<span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">cfg.keeptrials</span><span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">=
keepTrials;</span></div>
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<span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">cfg.chanlow<span class="Apple-converted-space"> </span></span><span class="Apple-converted-space" style="font-size: 12pt;">
</span><span style="font-size: 12pt;" class="">= cueHPCPower.label; %an individual hippocampal channel</span></div>
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<span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">cfg.chanhigh</span><span class="Apple-converted-space" style="font-size: 12pt;"> </span><span style="font-size: 12pt;" class="">=
cuePFCPower.label; %an individual prefrontal channel</span></div>
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<span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">cfg.freqlow<span class="Apple-converted-space"> </span></span><span class="Apple-converted-space" style="font-size: 12pt;">
</span><span style="font-size: 12pt;" class="">= phaseBand; </span></div>
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<span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">cfg.freqhigh</span><span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="font-size: 12pt;" class="">=
ampBand;</span></div>
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<span class="Apple-converted-space" style="font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span class="Apple-converted-space" style="color: rgb(200, 38, 19); font-size: 12pt;"> <span class="Apple-converted-space"> </span></span><span style="color: rgb(200, 38, 19); font-size: 12pt;" class="">CFC<span class="Apple-converted-space"> </span></span><span class="Apple-converted-space" style="color: rgb(200, 38, 19); font-size: 12pt;">
</span><span style="color: rgb(200, 38, 19); font-size: 12pt;" class="">= ft_crossfrequencyanalysis(cfg,cueHPCPower,cuePFCPower);</span></div>
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<span style="font-size: 12pt;" class="">As a result the output of the CFC command does not ascribe a channel, and the crsspctrm is not calculated looking a bit like</span></div>
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<span style="font-size: 12pt;" class="">label 0x1 cell</span></div>
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<span style="font-size: 12pt;" class="">crsspctrm []</span></div>
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<span style="font-size: 12pt;" class="">Im currently using fieldtrip-20210413 (which I downloaded for the excellent course Donders did!)</span></div>
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<span style="font-size: 12pt;" class="">I hope that makes more sense</span></div>
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<span style="font-size: 12pt;" class="">Many thanks</span></div>
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<span style="font-size: 12pt;" class="">Umesh</span></div>
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<font face="Calibri, sans-serif" style="font-size: 11pt;" class=""><b class="">From:</b><span class="Apple-converted-space"> </span>fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" class="">fieldtrip-bounces@science.ru.nl</a>> on behalf of Schoffelen,
J.M. (Jan Mathijs) via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>16 June 2021 19:24<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Cc:</b><span class="Apple-converted-space"> </span>Schoffelen, J.M. (Jan Mathijs) <<a href="mailto:janmathijs.schoffelen@donders.ru.nl" class="">janmathijs.schoffelen@donders.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [FieldTrip] Using ft_crossfrequencyanalysis</font>
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<span class="" style="">Hi Umesh,</span>
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<div class="" style="">What was the error? '<span class="" style="font-size: 11pt;">cfg.chanlow and cfg.chanhigh were forbidden variables</span><span class="" style="font-size: 14.666666984558105px;">’</span><span class="" style="font-size: 11pt;">?</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;"><br class="">
</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;">Please paste the complete error as you get it on the screen, as well as the stack (i.e. the line at which the error is thrown).</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;">Also, what is the version of FieldTrip you have been using?</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;"><br class="">
</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;">We need a little bit more information to be able to think along.</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;"><br class="">
</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;">Good luck,</span></div>
<div class="" style=""><span class="" style="font-size: 14.666666984558105px;">Jan-Mathijs</span></div>
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On 16 Jun 2021, at 17:38, Vivekananda, Umesh via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>> wrote:</div>
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Dear team</div>
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I have used this function in the past successfully when considering within channel analysis. However when I used the function again but across channels like so</div>
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cfg.method<span class="x_Apple-converted-space"> <span class="x_Apple-converted-space"> </span></span>=<span class="x_Apple-converted-space"> </span><span class="x_s1" style="color: rgb(160, 32, 240);">'plv'</span>;</div>
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<span class="" style="font-family: Helvetica; font-size: 10px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: normal;">cfg.keeptrials</span><span class="x_Apple-converted-space" style="font-family: Helvetica; font-size: 10px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: normal;"> <span class="x_Apple-converted-space"> </span></span><span class="" style="font-family: Helvetica; font-size: 10px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: normal;">=
keepTrials;</span></div>
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cfg.chanlow<span class="x_Apple-converted-space"> </span><span class="x_Apple-converted-space"> <span class="x_Apple-converted-space"> </span></span>= cueHPCPower.label;</div>
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cfg.chanhigh<span class="x_Apple-converted-space"> <span class="x_Apple-converted-space"> </span></span>= cuePFCPower.label;</div>
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cfg.freqlow<span class="x_Apple-converted-space"> </span><span class="x_Apple-converted-space"> <span class="x_Apple-converted-space"> </span></span>= phaseBand;</div>
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cfg.freqhigh<span class="x_Apple-converted-space"> <span class="x_Apple-converted-space"> </span></span>= ampBand;</div>
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CFC<span class="x_Apple-converted-space"> </span><span class="x_Apple-converted-space"> <span class="x_Apple-converted-space"> </span></span>= ft_crossfrequencyanalysis(cfg,cueHPCPower,cuePFCPower);</div>
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<span class="" style="font-size: 11pt;">I got an error stating cfg.chanlow and cfg.chanhigh were forbidden variables. I had derived a fourier spectrum for HPC and PFC channel separately in order to compute individual channel CFC before averaging. Any help
would be much appreciated</span></div>
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<span class="" style="font-size: 11pt;"><br class="">
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<span class="" style="font-size: 11pt;">Thanks</span></div>
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<span class="" style="font-size: 11pt;">Umesh </span><br class="">
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<span class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; text-decoration: none; float: none; display: inline !important;">_______________________________________________</span><br class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; text-decoration: none;">
<span class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; text-decoration: none; float: none; display: inline !important;">fieldtrip
mailing list</span><br class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; text-decoration: none;">
<a href="https://urldefense.com/v3/__https://eur01.safelinks.protection.outlook.com/?url=https*3A*2F*2Fmailman.science.ru.nl*2Fmailman*2Flistinfo*2Ffieldtrip&data=04*7C01*7C*7Cb924a92bdd5141e88aeb08d930f4b4af*7C1faf88fea9984c5b93c9210a11d9a5c2*7C0*7C0*7C637594649834203108*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C1000&sdata=XWEJuEiZfT4Bz5rt3g24xjjvySsFvQdoYnr8bOMMQjk*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUl!!HJOPV4FYYWzcc1jazlU!tBqTHEuJNmupcztk3H7hY7hEBO8skHWLWXFXsDYOVyTfG1qZwDoZWI7ROef2L7kc0UOF3gdlsmQtHKs$" originalsrc="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" shash="NOwz7WmcQmqHto1lcxqcn1LkIv7L3ItXSsb3S154bO7Ik4M9UgkyP96ODWYTvGo63U/DG1FJvmFKonztUhZHjPYDdVRyWaGV1va6ySVj/i7knW80fuvXZZiNGAG/BblPEWCzTa1IpyDUE/yphvv1+wZpmrEV5fUu8fJPu/jEstM=" class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; text-decoration: none;">
<a href="https://urldefense.com/v3/__https://eur01.safelinks.protection.outlook.com/?url=https*3A*2F*2Furldefense.com*2Fv3*2F__https*3A*2F*2Fdoi.org*2F10.1371*2Fjournal.pcbi.1002202__*3B!!HJOPV4FYYWzcc1jazlU!s15pfcIalzeG1LxQnj1prFk9nmTQ0RpcOTqzavjhZrbWASncFoXWoEHBW_40_XhqkcEEGBP2*24&data=04*7C01*7C*7Cb924a92bdd5141e88aeb08d930f4b4af*7C1faf88fea9984c5b93c9210a11d9a5c2*7C0*7C0*7C637594649834208089*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C1000&sdata=nFXAw5HlhDDT*2BVc24W0gbd7Rj*2FB594SwuryHM0P3ASg*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUlJSU!!HJOPV4FYYWzcc1jazlU!tBqTHEuJNmupcztk3H7hY7hEBO8skHWLWXFXsDYOVyTfG1qZwDoZWI7ROef2L7kc0UOF3gdlIRlADt4$" originalsrc="https://urldefense.com/v3/__https://doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!s15pfcIalzeG1LxQnj1prFk9nmTQ0RpcOTqzavjhZrbWASncFoXWoEHBW_40_XhqkcEEGBP2$" shash="y1vHmQ2zaHRhCMVG2575SXiEMDjIET4qI1XyFHC+e3FlMgvmNFPR4LbhVtdw8q5ormMR6feY0YLMT+G71ZC6kgjpAmZ74OyTJF+knStT52S+dX2nyCRI5sjPTafLKIvL04FvDzK5wnOOieeSiHfmKLHHkZqF1OPcIpZjEPYVfs8=" class="" style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;">https://urldefense.com/v3/__https://doi.org/10.1371/journal.pcbi.1002202__;!!HJOPV4FYYWzcc1jazlU!s15pfcIalzeG1LxQnj1prFk9nmTQ0RpcOTqzavjhZrbWASncFoXWoEHBW_40_XhqkcEEGBP2$</a></div>
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