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Hi Jan, </div>
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Thank you so much for your insightful response. It all makes much more sense now - I apologise for my confusion with this.</div>
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My preference for sticking with the "spline" method was motivated by the fact that I had already processed over 40 files using the initially provided configurations and I wanted to keep my methodology consistent going forward with the project. </div>
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I can confirm that changing the method to average and replacing<span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"> the </span><span style="font-family: "Courier New", monospace; font-size: 12pt; color: rgb(0, 0, 0);">cfg.elec</span><span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
 configuration with </span><span style="font-family: "Courier New", monospace; font-size: 12pt; color: rgb(0, 0, 0);">cfg.layout </span><span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">​works fine - which
 is great news! </span></div>
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<span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">Thanks again for your help and all the best!</span></div>
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<p style="margin-top:0px; margin-bottom:0px; margin-top:0; margin-bottom:0"><span style="font-family:"Calibri Light","Helvetica Light",sans-serif">_________________________</span></p>
<span style="font-family:"Calibri Light","Helvetica Light",sans-serif"></span>
<p style="margin-top:0px; margin-bottom:0px; margin-top:0; margin-bottom:0"><span style="font-family:"Calibri Light","Helvetica Light",sans-serif">Marta Topor</span></p>
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 07AC04</span><br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> fieldtrip <fieldtrip-bounces@science.ru.nl> on behalf of Schoffelen, J.M. (Jan Mathijs) via fieldtrip <fieldtrip@science.ru.nl><br>
<b>Sent:</b> 28 May 2021 7:47 PM<br>
<b>To:</b> FieldTrip discussion list <fieldtrip@science.ru.nl><br>
<b>Cc:</b> Schoffelen, J.M. (Jan Mathijs) <jan.schoffelen@donders.ru.nl><br>
<b>Subject:</b> Re: [FieldTrip] layout file error after upgrading to the newest version</font>
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<div class="" style="word-wrap:break-word; line-break:after-white-space">Hi Marta,
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<div class="">Rather than just trying out more or less all kinds of possible solutions, I suggest to step back and think about what you want to achieve:</div>
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<div class="">You seem to want to call ft_channelrepair and use the ’spline’ method to interpolate between non-bad channels, to get a modelled signal for the bad channels.</div>
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<div class="">So far so good.</div>
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<div class="">Now, in order to use the ’spline’ method, you need to supply a geometric description of the channels, a.k.a. an elec structure, which is a matlab structure that at least should specify the 3D positions of the electrodes. This is different from
 a layout, because a layout is a 2D schematic of the channel array that can be used for topographical visualization. Also, it could be that another method in ft_channelrepair does not require a set of 3D channel position, but only requires a definition of channel
 neighbours (without position information). So, you either need to supply ft_channelrepair with 3D channel position information for the ’spline’ interpolation, or you should consider using a different interpolation method.</div>
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<div class="">What you should know, is that the information in the layout structure, pertaining to the channel positions, is stored in the field <name-of-the-variable>.pos, whereas in an elec structure, the channel positions should be represented as <name-of-the-variable>.chanpos,
 so your attempt in adding a column of zeros is not only wrong in the sense that it would have led to a distorted spline interpolation, it is also not going to work due to a difference in fieldnames.</div>
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<div class="">Long story short, if you require ft_channelrepair to use a method that needs a sensor description, you need to pass a valid sensor description in the cfg, OR in the data argument.</div>
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<div class="">Please consult the documentation</div>
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<div class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.fieldtriptoolbox.org%2Ffaq%2Fhow_are_electrodes_magnetometers_or_gradiometers_described%2F&data=04%7C01%7Cm.topor%40surrey.ac.uk%7Cc8711cadd94f4882b00908d9220a2385%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637578249223142833%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=uHVfP656H6is07lxRBQfJEaMRPsPCGUWT95vEApE8hA%3D&reserved=0" originalsrc="https://www.fieldtriptoolbox.org/faq/how_are_electrodes_magnetometers_or_gradiometers_described/" shash="l9WWN9nF8mGH/SiuQOSFWo3vLZvI9RIN1UsWnRMa74n6daYOQoubtJ/BJDVdkOR46K+R52lza3vLhLxPHT3BQKKOsJIGzMBCldJx9Cgy4yKr/Zxznm7lOd8I5sCacG8WZSVHyJNDdUU9wirqIIJL8lBZAzjc2jgRjRbW8Y0Txac=" class="">https://www.fieldtriptoolbox.org/faq/how_are_electrodes_magnetometers_or_gradiometers_described/</a></div>
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<div class="">for a more detailed description of an elec-array.</div>
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<div class="">Best wishes,</div>
<div class="">Jan-Mathijs</div>
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<div class="">On 28 May 2021, at 15:59, Marta Topor via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>> wrote:</div>
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Hi Tzvetan, </div>
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Thank you for your quick response, much appreciated!</div>
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I have spent a bit of time today trying to work this out. </div>
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If I do not include the cfg.elec line, I get another error:</div>
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<span class="" style="font-family:"Courier New",monospace">Error using ft_fetch_sens (line 202)</span><br class="">
<span class="" style="font-family:"Courier New",monospace">no electrodes, gradiometers or optodes specified.</span><br class="">
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">I have checked through my code and files thoroughly and I do not have a 3D layout file. I initially created my layout file from an image and it has always been in 2D. It seems
 that when I was running the code before, it worked OK with the 2D file. </span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">Do you have any ideas for getting around this issue? I tried adding 0s throughout the layout structure to "pretend" it was 3D but it also did not work that way. </span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">Thanks again and best wishes,</span></div>
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<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">_________________________</span></div>
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<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">Marta Topor</span></div>
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<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">PhD Candidate</span></div>
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<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">School of Psychology</span></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">University of Surrey </span></div>
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<font face="Calibri, sans-serif" class="" style="font-size:11pt"><b class="">From:</b><span class="x_Apple-converted-space"> </span>fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" class="">fieldtrip-bounces@science.ru.nl</a>> on behalf of Tzvetan
 Popov <<a href="mailto:tzvetan.popov@uni-konstanz.de" class="">tzvetan.popov@uni-konstanz.de</a>><br class="">
<b class="">Sent:</b><span class="x_Apple-converted-space"> </span>28 May 2021 7:37 AM<br class="">
<b class="">To:</b><span class="x_Apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="x_Apple-converted-space"> </span>Re: [FieldTrip] layout file error after upgrading to the newest version</font>
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Dear Marta,
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<div class="">In your cfg.elec, a 3D description of electrodes positions is expected. Yet you have a 2D layout structure. I assume that your neighbours are also defined in this 2D plane. </div>
<div class="">Can you comment out the cfg.elec line and try again? Ft_read_sens is not supposed to work on 2D layout file, hence the error. </div>
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<div class="">Good luck,</div>
<div class="">tzvetan</div>
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<div class="">On 27 May 2021, at 22:24, Marta Topor <<a href="mailto:m.topor@surrey.ac.uk" class="">m.topor@surrey.ac.uk</a>> wrote:</div>
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Dear colleagues, </div>
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I came across a surprising error and I am struggling to figure it out. </div>
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<span class="" style="font-size:12pt; font-family:Calibri,Arial,Helvetica,sans-serif">I wrote a few scripts last year in version</span><span class="" style="font-size:12pt; font-family:Calibri,Arial,Helvetica,sans-serif"> </span><span class="" style="font-size:12pt; font-family:Calibri,Arial,Helvetica,sans-serif">fieldtrip-20200409.
 They all worked fine, last time I worked with those scripts in that version was January 2021. I had to take care of a few other tasks since then, so the project was on pause. I had my work laptop upgraded in the meantime which meant I had to upgrade to the
 newest Fieldtrip version.</span><br class="">
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</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">I started working on that same project again, in version fieldtrip-20210525, and noticed layout file issues when interpolating channels. </span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">For a bit of background,  I am using the Mobita water-based 32 EEG electrode system. I created my own layout file in the previous Fieldtrip version
 which worked without any issues in all scripts.</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">I now have an error using the ft_channelrepair() funtion and I think it relates to the ft_read_sens() funtion. </span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><b class="">The cfg I used: </b></span></div>
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<span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg = [];</span><br class="">
</div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.method          = 'spline';</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.neighbours      = neighbours_EEG;</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.badchannel      = badchannels_train;</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.senstype        = 'EEG';</span></div>
</span><span class="" style="font-family:"Courier New",monospace; font-size:12pt; display:inline!important">cfg.elec            = layout_file;</span><span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><br class="">
</span></div>
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<span class="" style="font-family:"Courier New",monospace; font-size:12pt; display:inline!important">mydata_interpolated_train = ft_channelrepair(cfg, mydata_artrm_train);</span><span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><br class="">
</span></div>
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</span></div>
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<div class=""><b class="">The layout file fields are:</b></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">pos: [34×2 double]</span>
<div class=""><span class="" style="font-family:"Courier New",monospace">label: {34×1 cell}</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">width: [34×1 double]</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">height: [34×1 double]</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">outline: {1×4 cell}</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">mask: {[101×2 double]}</span></div>
<span class="" style="font-family:"Courier New",monospace">cfg: [1×1 struct]</span><br class="">
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</div>
<div class="">But I can only see these fields if I use the function importdata(). When I use the function ft_read_sens() and when I try to interpolate channels, I get the following error:</div>
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<div class=""><b class="">Error message:</b></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Unrecognized function or variable 'lab'.</span>
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</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in channelposition (line 352)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">n = size(lab,2);</span></div>
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</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 438)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">        [chanpos, chanori, lab] = channelposition(sens);</span></div>
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</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 240)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">    sens      = ft_datatype_sens(sens, new_argin{:});</span></div>
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</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 207)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">    sens      = ft_datatype_sens(sens, new_argin{:});</span></div>
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</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 180)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">    sens      = ft_datatype_sens(sens, new_argin{:});</span></div>
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</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_read_sens (line 539)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">sens = ft_datatype_sens(sens);</span></div>
<span class="" style="font-size:12pt"> </span><br class="">
</div>
 </span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">There are no errors when I plot the channels using the following code though and it all looks absolutely fine:</span></div>
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<span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg = [];</span>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.layout = layout_m; %layout_m is imported from the layout_file using the importdata() function</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.channel = 'eeg';</span></div>
<span class="" style="font-family:"Courier New",monospace; font-size:12pt">ft_layoutplot(cfg, mydata_artrm_train);</span><br class="">
</div>
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<span class="" style="font-family:Calibri,Helvetica,sans-serif; font-size:12pt">Any ideas what could be the issue here and how I could get it solved? </span></div>
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<span class="" style="font-family:Calibri,Helvetica,sans-serif; font-size:12pt">Thanks for your help in advance!</span></div>
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<span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif"></span>
<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">Marta Topor</span></div>
<span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif"></span>
<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">PhD Candidate</span></div>
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<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif; font-size:16px">Room 07AC04</span><br class="">
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<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">School of Psychology</span></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="font-family:"Calibri Light","Helvetica Light",sans-serif">University of Surrey </span></div>
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