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Hi Tzvetan, </div>
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Thank you for your quick response, much appreciated!</div>
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I have spent a bit of time today trying to work this out. </div>
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If I do not include the cfg.elec line, I get another error:</div>
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<span style="font-family:"Courier New",monospace">Error using ft_fetch_sens (line 202)</span><br>
<span style="font-family:"Courier New",monospace">no electrodes, gradiometers or optodes specified.</span><br>
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<div style=""><span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">I have checked through my code and files thoroughly and I do not have a 3D layout file. I initially created my layout file from an image and
 it has always been in 2D. It seems that when I was running the code before, it worked OK with the 2D file. </span></div>
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<div style=""><span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">Do you have any ideas for getting around this issue? I tried adding 0s throughout the layout structure to "pretend" it was 3D but it also did
 not work that way. </span></div>
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<div style=""><span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">Thanks again and best wishes,</span></div>
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<span style="font-family:"Calibri Light","Helvetica Light",sans-serif">_________________________</span></p>
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<span style="font-family:"Calibri Light","Helvetica Light",sans-serif">Marta Topor</span></p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> fieldtrip <fieldtrip-bounces@science.ru.nl> on behalf of Tzvetan Popov <tzvetan.popov@uni-konstanz.de><br>
<b>Sent:</b> 28 May 2021 7:37 AM<br>
<b>To:</b> FieldTrip discussion list <fieldtrip@science.ru.nl><br>
<b>Subject:</b> Re: [FieldTrip] layout file error after upgrading to the newest version</font>
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<div class="" style="word-wrap:break-word; line-break:after-white-space">Dear Marta,
<div class=""><br class="">
</div>
<div class="">In your cfg.elec, a 3D description of electrodes positions is expected. Yet you have a 2D layout structure. I assume that your neighbours are also defined in this 2D plane. </div>
<div class="">Can you comment out the cfg.elec line and try again? Ft_read_sens is not supposed to work on 2D layout file, hence the error. </div>
<div class=""><br class="">
</div>
<div class="">Good luck,</div>
<div class="">tzvetan</div>
<div class=""><br class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On 27 May 2021, at 22:24, Marta Topor <<a href="mailto:m.topor@surrey.ac.uk" class="">m.topor@surrey.ac.uk</a>> wrote:</div>
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Dear colleagues, </div>
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I came across a surprising error and I am struggling to figure it out. </div>
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<span class="" style="font-size:12pt; font-family:Calibri,Arial,Helvetica,sans-serif">I wrote a few scripts last year in version</span><span class="" style="font-size:12pt; font-family:Calibri,Arial,Helvetica,sans-serif"> </span><span class="" style="font-size:12pt; font-family:Calibri,Arial,Helvetica,sans-serif">fieldtrip-20200409.
 They all worked fine, last time I worked with those scripts in that version was January 2021. I had to take care of a few other tasks since then, so the project was on pause. I had my work laptop upgraded in the meantime which meant I had to upgrade to the
 newest Fieldtrip version.</span><br class="">
</div>
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</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">I started working on that same project again, in version fieldtrip-20210525, and noticed layout file issues when interpolating channels. </span></div>
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</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">For a bit of background,  I am using the Mobita water-based 32 EEG electrode system. I created my own layout file in the previous Fieldtrip version
 which worked without any issues in all scripts.</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">I now have an error using the ft_channelrepair() funtion and I think it relates to the ft_read_sens() funtion. </span></div>
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</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><b class="">The cfg I used: </b></span></div>
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<span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg = [];</span><br class="">
</div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.method          = 'spline';</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.neighbours      = neighbours_EEG;</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.badchannel      = badchannels_train;</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.senstype        = 'EEG';</span></div>
</span><span class="" style="font-family:"Courier New",monospace; font-size:12pt; display:inline!important">cfg.elec            = layout_file;</span><span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><br class="">
</span></div>
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<span class="" style="font-family:"Courier New",monospace; font-size:12pt; display:inline!important">mydata_interpolated_train = ft_channelrepair(cfg, mydata_artrm_train);</span><span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><br class="">
</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important"><br class="">
</span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; display:inline!important">
<div class=""><br class="">
</div>
<div class=""><b class="">The layout file fields are:</b></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">pos: [34×2 double]</span>
<div class=""><span class="" style="font-family:"Courier New",monospace">label: {34×1 cell}</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">width: [34×1 double]</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">height: [34×1 double]</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">outline: {1×4 cell}</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace">mask: {[101×2 double]}</span></div>
<span class="" style="font-family:"Courier New",monospace">cfg: [1×1 struct]</span><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">But I can only see these fields if I use the function importdata(). When I use the function ft_read_sens() and when I try to interpolate channels, I get the following error:</div>
<div class=""><br class="">
</div>
<div class=""><b class="">Error message:</b></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Unrecognized function or variable 'lab'.</span>
<div class=""><br class="">
</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in channelposition (line 352)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">n = size(lab,2);</span></div>
<div class=""><br class="">
</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 438)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">        [chanpos, chanori, lab] = channelposition(sens);</span></div>
<div class=""><br class="">
</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 240)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">    sens      = ft_datatype_sens(sens, new_argin{:});</span></div>
<div class=""><br class="">
</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 207)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">    sens      = ft_datatype_sens(sens, new_argin{:});</span></div>
<div class=""><br class="">
</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_datatype_sens (line 180)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">    sens      = ft_datatype_sens(sens, new_argin{:});</span></div>
<div class=""><br class="">
</div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">Error in ft_read_sens (line 539)</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">sens = ft_datatype_sens(sens);</span></div>
<span class="" style="font-size:12pt"> </span><br class="">
</div>
 </span></div>
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<span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">There are no errors when I plot the channels using the following code though and it all looks absolutely fine:</span></div>
<div class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg = [];</span>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.layout = layout_m; %layout_m is imported from the layout_file using the importdata() function</span></div>
<div class=""><span class="" style="font-family:"Courier New",monospace; font-size:12pt">cfg.channel = 'eeg';</span></div>
<span class="" style="font-family:"Courier New",monospace; font-size:12pt">ft_layoutplot(cfg, mydata_artrm_train);</span><br class="">
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<span class="" style="font-family:Calibri,Helvetica,sans-serif; font-size:12pt">Any ideas what could be the issue here and how I could get it solved? </span></div>
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<span class="" style="font-family:Calibri,Helvetica,sans-serif; font-size:12pt">Thanks for your help in advance!</span></div>
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<a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.1371%2Fjournal.pcbi.1002202&data=04%7C01%7Cm.topor%40surrey.ac.uk%7Cfb3553ce7a574f3d9e0808d921a46db2%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C1%7C637577812370135929%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=Fumrt1UpioQgxcez701bgwQQRBGMziEmuqef9vM77Eg%3D&reserved=0" originalsrc="https://doi.org/10.1371/journal.pcbi.1002202" shash="Pax2Milc9z9dPWJlgPrbsq63PlTWv7igov8bTJ8sNLtLMalLbmCvzBjqJJyoQGJjAOV/joBzc2qln+yj78FYs15T/XbzVtpV3pSIQdwrEtdZGHx5udQiB8YKa3CaT0gWgRb3G1qSropplZiHNZww5pTb09QEFPrPKCYN5+1gJNs=" class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">https://doi.org/10.1371/journal.pcbi.1002202</a></div>
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