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Hi Tibor,
<div class=""><br class="">
</div>
<div class="">I don’t know what is wrong with this snippet, apart from the fact that there’s no guarantee that the volume in mri.anatomy matches (in terms of voxel dimensions and orientation) with the volumes that you load in with spm_read_vols.</div>
<div class=""><br class="">
</div>
<div class="">JM</div>
<div class=""><br class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On 28 Sep 2020, at 23:00, <a href="mailto:tibor.auer@gmail.com" class="">
tibor.auer@gmail.com</a> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
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<span lang="EN-GB" class="">Hi JM,<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Can you tell me what is wrong with the snippet below? It generates the attached image (i.e. the headmodel and the sourcemodel do not match).<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">FTpath = '/users/psychology01/software/fieldtrip';<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class=""><o:p class=""> </o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">mrifn = 'T1w.nii';<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class="">mri = ft_read_mri(mrifn,'dataformat','nifti_spm');<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">mri = ft_datatype_volume(mri);<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">mri.coordsys = 'ras';<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class=""><o:p class=""> </o:p></span></i></div>
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<i class=""><span lang="EN-GB" class="">segfn = char('c1.nii','c2.nii','c3.nii');<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">Y = spm_read_vols(spm_vol(segfn));<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class="">seg = keepfields(mri,{'dim','transform','coordsys','unit'});<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class="">seg.gray = Y(:,:,:,1);<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">seg.white = Y(:,:,:,2);<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">seg.csf = Y(:,:,:,3);<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">clear Y<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class=""><o:p class=""> </o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">cfg = [];<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class="">cfg.method = 'singleshell';<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">headmodel = ft_prepare_headmodel(cfg, seg);<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class=""><o:p class=""> </o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">dat = load(fullfile(FTpath,'template/sourcemodel/standard_sourcemodel3d10mm.mat'));<o:p class=""></o:p></span></i></div>
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<i class=""><span lang="EN-GB" class="">cfg = [];<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">cfg.warpmni = 'yes';<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">cfg.template = dat.sourcemodel;<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">cfg.nonlinear = 'yes';<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">cfg.mri = mri;<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">cfg.unit ='mm';<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">sourcemodel = ft_prepare_sourcemodel(cfg);<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class=""><o:p class=""> </o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">% make a figure of the single subject headmodel, and grid positions<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">figure; hold on;<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">ft_plot_headmodel(headmodel, 'edgecolor', 'none','facecolor',[0.5 0.5 0.5],'facealpha', 0.4);<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm 0cm 0cm 35.4pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span lang="EN-GB" class="">ft_plot_mesh(sourcemodel.pos(sourcemodel.inside,:));<o:p class=""></o:p></span></i></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Tibor<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.<o:p class=""></o:p></span></b></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow<o:p class=""></o:p></span></b></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" style="color: rgb(0, 102, 255);" class=""><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><u class=""><span style="color: rgb(5, 99, 193);" class=""><o:p class=""></o:p></span></u></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
</div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div class="">
<div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0cm 0cm;" class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" class="">From:</span></b><span lang="EN-GB" class=""><span class="Apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="Apple-converted-space"> </span><<a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a>><span class="Apple-converted-space"> </span><br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>Monday, September 28, 2020 5:03 PM<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>'FieldTrip discussion list' <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>RE: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
</div>
</div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">I found it:<span class="Apple-converted-space"> </span><a href="http://www.fieldtriptoolbox.org/tutorial/sourcemodel/#make-the-individual-subjects-grid" style="color: blue; text-decoration: underline;" class="">http://www.fieldtriptoolbox.org/tutorial/sourcemodel/#make-the-individual-subjects-grid</a><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Tibor<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.<o:p class=""></o:p></span></b></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow<o:p class=""></o:p></span></b></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" style="color: rgb(0, 102, 255);" class=""><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><u class=""><span style="color: rgb(5, 99, 193);" class=""><o:p class=""></o:p></span></u></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
</div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div class="">
<div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0cm 0cm;" class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" class="">From:</span></b><span lang="EN-GB" class=""><span class="Apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="Apple-converted-space"> </span><<a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a>><span class="Apple-converted-space"> </span><br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>Monday, September 28, 2020 5:00 PM<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>'FieldTrip discussion list' <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>RE: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
</div>
</div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">And how do I inverse-warp them?<span class="Apple-converted-space"> </span></span><span lang="EN-GB" style="font-family: "Segoe UI Emoji", sans-serif;" class="">😊</span><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">Tibor<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.<o:p class=""></o:p></span></b></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow<o:p class=""></o:p></span></b></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" style="color: rgb(0, 102, 255);" class=""><o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><u class=""><span style="color: rgb(5, 99, 193);" class=""><o:p class=""></o:p></span></u></span></div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
</div>
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span lang="EN-GB" class=""><o:p class=""> </o:p></span></div>
<div class="">
<div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0cm 0cm;" class="">
<div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class=""><span lang="EN-GB" class="">From:</span></b><span lang="EN-GB" class=""><span class="Apple-converted-space"> </span>fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip-bounces@science.ru.nl</a>><span class="Apple-converted-space"> </span><b class="">On
Behalf Of<span class="Apple-converted-space"> </span></b>Schoffelen, J.M. (Jan Mathijs)<br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>Monday, September 28, 2020 4:37 PM<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Dear Tibor,<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Well, I meant you can use one of the standard sourcemodels, provided you inverse-warp them to individual subject space.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Best wishes,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Jan-Mathijs<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">On 28 Sep 2020, at 17:25,<span class="Apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="Apple-converted-space"> </span>wrote:<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Do you mean I could simply use <fieldtrip>/template/sourcemodel/standard_sourcemodel3d10mm.mat?<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Tibor<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" class="">From:</span></b><span class="apple-converted-space"><span lang="EN-GB" class=""> </span></span><span lang="EN-GB" class="">fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip-bounces@science.ru.nl</a>><span class="apple-converted-space"> </span><b class="">On
Behalf Of<span class="apple-converted-space"> </span></b>Schoffelen, J.M. (Jan Mathijs)<br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>Monday, September 28, 2020 3:28 PM<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>Re: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Well, the group analysis section should be sufficient.<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Best wishes,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">JM<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">On 28 Sep 2020, at 16:20,<span class="apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="apple-converted-space"> </span>wrote:<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Hi JM,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Thank you for the information.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Regarding 3D grids, the<span class="apple-converted-space"> </span><a href="http://www.fieldtriptoolbox.org/tutorial/sourcemodel/#construction-of-a-source-model-based-on-a-regular-3-dimensional-grid-of-dipole-positions" style="color: blue; text-decoration: underline;" class="">http://www.fieldtriptoolbox.org/tutorial/sourcemodel/#construction-of-a-source-model-based-on-a-regular-3-dimensional-grid-of-dipole-positions</a><span class="apple-converted-space"> </span>section
says “Content is coming soon!”. Only the steps required for group analysis are detailed.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Tibor<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" class="">From:</span></b><span class="apple-converted-space"><span lang="EN-GB" class=""> </span></span><span lang="EN-GB" class="">fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip-bounces@science.ru.nl</a>><span class="apple-converted-space"> </span><b class="">On
Behalf Of<span class="apple-converted-space"> </span></b>Schoffelen, J.M. (Jan Mathijs)<br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>Monday, September 28, 2020 1:05 PM<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>Re: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Hi Tibor,<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Well, I don’t have a strong recommendation to go for either, apart from the fact that a distributed source reconstruction method (such as eLORETA) benefits from an accurate source model to begin with. Also, it depends on what you
aim in your source reconstruction. Limiting yourself to the cortical sheet gets rid subcortical structures/cerebellum.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Regarding 3D grids, there is some stuff that relates to 3D grids, isn’t there?<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Best wishes,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">JM<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">On 28 Sep 2020, at 13:52,<span class="apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="apple-converted-space"> </span>wrote:<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Thank you, Jan-Mathijs,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">This link is very instructive. I wonder why it eluded me so far.<span class="apple-converted-space"> </span></span><span lang="EN-GB" style="font-family: "Segoe UI Emoji", sans-serif;" class="">😊</span><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">If I get it right, you recommend using approach based on the cortical sheet because 1) the tutorial for 3D grid is not there yet and 2) I can use results from cortical sheet directly for group analysis.<o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" class="">From:</span></b><span class="apple-converted-space"><span lang="EN-GB" class=""> </span></span><span lang="EN-GB" class="">fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip-bounces@science.ru.nl</a>><span class="apple-converted-space"> </span><b class="">On
Behalf Of<span class="apple-converted-space"> </span></b>Schoffelen, J.M. (Jan Mathijs)<br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>Monday, September 28, 2020 10:21 AM<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>Re: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Dear Tibor,<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">It’s not clear to me what’s special about spm’s ‘unified segmentation’ regarding the creation of source models. <o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">I assume you are aware that source models eventually need to be in the subject’s native space in order for them to be useable.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Documentation about how to create a source model for EEG/MEG source reconstruction can be found at: <a href="http://www.fieldtriptoolbox.org/tutorial/sourcemodel/" style="color: blue; text-decoration: underline;" class="">http://www.fieldtriptoolbox.org/tutorial/sourcemodel/</a>,
which might be a good starting point. <o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Best wishes,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Jan-Mathijs<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">On 28 Sep 2020, at 10:03,<span class="apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="apple-converted-space"> </span>wrote:<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Hi Jan-Mathijs,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Thank you for your response. I found that post earlier and noticed that I may need to redo the freqanalysis, however, I still do not know how do I create the<span class="apple-converted-space"> </span><i class="">sourcemodel</i><span class="apple-converted-space"> </span>from
the T1-weighted MRI images already segmented with SPM12.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Tibor<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="mailto:T.Auer@surrey.ac.uk" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">T.Auer@surrey.ac.uk</span></a><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" class="">From:</span></b><span class="apple-converted-space"><span lang="EN-GB" class=""> </span></span><span lang="EN-GB" class="">fieldtrip <<a href="mailto:fieldtrip-bounces@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip-bounces@science.ru.nl</a>><span class="apple-converted-space"> </span><b class="">On
Behalf Of<span class="apple-converted-space"> </span></b>Schoffelen, J.M. (Jan Mathijs)<br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>Thursday, September 24, 2020 8:12 AM<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: blue; text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>><br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>Re: [FieldTrip] eLORETA source analysis<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Hi Tibor,<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Some of this is discussed (and fixed, there were some small issues in the code) in <a href="https://github.com/fieldtrip/fieldtrip/issues/1454" style="color: blue; text-decoration: underline;" class="">https://github.com/fieldtrip/fieldtrip/issues/1454</a> and
the PR that is linked in the linked issue.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Note: if you want to go from sensor-level to source-level data in the frequency domain, you should either use ‘powandcsd’, or ‘fourier’ as cfg.output argument to ft_freqanalysis.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Best wishes,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Jan-Mathijs<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">On 23 Sep 2020, at 13:42,<span class="apple-converted-space"> </span><a href="mailto:tibor.auer@gmail.com" style="color: blue; text-decoration: underline;" class="">tibor.auer@gmail.com</a><span class="apple-converted-space"> </span>wrote:<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Dear Community,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">I would like to perform an eLORETA source analysis, however, I am unsure about the steps.<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">I am working on the<span class="apple-converted-space"> </span><a href="http://fcon_1000.projects.nitrc.org/indi/retro/MPI_LEMON.html" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">LEMON
data</span></a><span class="apple-converted-space"> </span>including 62-channel EEG experiment at rest and structural (T1-weighted) MRI of >200 participants.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">I have preprocessed the EEG data and performed timefrequency analysis on the 2-second-long epochs with configuration:<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">method: 'mtmfft'<o:p class=""></o:p></span></li><li class="MsoListParagraph" style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;">
<span lang="EN-GB" class="">taper: 'hanning'<o:p class=""></o:p></span></li><li class="MsoListParagraph" style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;">
<span lang="EN-GB" class="">foi: [0.9766 1.9531 3.9062 5.8594 7.8125 12.2070 15.1367 20.0195 24.9023 32.2266 40.0391 60.0586 69.8242 80.0781 95.2148 109.8633 120.1172]<o:p class=""></o:p></span></li><li class="MsoListParagraph" style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;">
<span lang="EN-GB" class="">pad: 2.0480<o:p class=""></o:p></span></li><li class="MsoListParagraph" style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;">
<span lang="EN-GB" class="">output: 'pow'<o:p class=""></o:p></span></li><li class="MsoListParagraph" style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;">
<span lang="EN-GB" class="">keeptrials: 'no'<o:p class=""></o:p></span></li><li class="MsoListParagraph" style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;">
<span lang="EN-GB" class="">trials: [233×1 double]<o:p class=""></o:p></span></li></ul>
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<span lang="EN-GB" class="">I have also processed the MRI images and normalised-segmented them using SPM12’s unified segmentation outside FieldTrip.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">I would appreciate any help including code snippets, pointers to (order of) functions or specific and detailed tutorials.<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Kind regards,<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">Tibor<span class="apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(34, 42, 53);" class="">Auer, Tibor M.D. Ph.D.</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">Research Fellow</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-GB" style="color: rgb(0, 102, 255);" class="">School of Psychology, Faculty of Health and Medical Sciences</span></b><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" class="">University of Surrey, Guildford GU2 7XH<o:p class=""></o:p></span></div>
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<span lang="EN-GB" class=""><a href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftwitter.com%2FTiborAuer&data=02%7C01%7Ct.auer%40surrey.ac.uk%7Cdb32da458c424eedef2908d7d4bd1421%7C6b902693107440aa9e21d89446a2ebb5%7C0%7C0%7C637211780868086968&sdata=zrT5%2FnGGsar14C3WartuU99tzsfLu30Peh9fuaqrAUg%3D&reserved=0" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(5, 99, 193);" class="">@TiborAuer</span></a><o:p class=""></o:p></span></div>
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<span lang="EN-GB" style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">dy>_______________________________________________<br class="">
fieldtrip mailing list<br class="">
</span><span lang="EN-GB" class=""><a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif; color: rgb(5, 99, 193);" class="">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</span></a></span><span lang="EN-GB" style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class=""><br class="">
</span><span lang="EN-GB" class=""><a href="https://doi.org/10.1371/journal.pcbi.1002202" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif; color: rgb(5, 99, 193);" class="">https://doi.org/10.1371/journal.pcbi.1002202</span></a><o:p class=""></o:p></span></div>
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<span lang="EN-GB" style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">v>_______________________________________________<br class="">
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</span><span lang="EN-GB" class=""><a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</span></a></span><span lang="EN-GB" style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class=""><br class="">
</span><span lang="EN-GB" class=""><a href="https://doi.org/10.1371/journal.pcbi.1002202" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">https://doi.org/10.1371/journal.pcbi.1002202</span></a><o:p class=""></o:p></span></div>
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<a href="https://doi.org/10.1371/journal.pcbi.1002202" style="color: blue; text-decoration: underline;" class="">https://doi.org/10.1371/journal.pcbi.1002202</a></span><span lang="EN-GB" class=""><o:p class=""></o:p></span></div>
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<span lang="EN-GB" style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">/p>_______________________________________________<br class="">
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</span><span lang="EN-GB" class=""><a href="https://doi.org/10.1371/journal.pcbi.1002202" style="color: blue; text-decoration: underline;" class=""><span style="font-size: 10.5pt; font-family: Helvetica, sans-serif;" class="">https://doi.org/10.1371/journal.pcbi.1002202</span></a><o:p class=""></o:p></span></div>
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<a href="https://doi.org/10.1371/journal.pcbi.1002202" style="color: blue; text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">https://doi.org/10.1371/journal.pcbi.1002202</a><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
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