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Martin Schaefer has shared a OneDrive for Business file with you. To view it, click the link below.
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Dear Jan-Mathijs,</div>
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<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thanks for getting back to me!</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I did the debugging steps you recommended and attached a screenshot of the sourcemodel, the index gets created correctly as well.</div>
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I attached the data you asked for as a zip file, because they are ~110 mb I have to share them via OneDrive.</div>
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I also realised that I had writen down the wrong cfg configurations; these are the ones that lead to the error:</div>
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<span>cfg = [];<br>
</span>
<div>cfg.gridsearch         = 'yes';            <br>
</div>
<div>cfg.numdipoles      = 2;           <br>
</div>
<div>cfg.symmetry         = 'x';          <br>
</div>
<div>cfg.grid                    = leadfield_eeg;    <br>
</div>
<div>cfg.headmodel       = headmodel_eeg;   <br>
</div>
<div>cfg.dipfit.metric     = 'rv';             <br>
</div>
<div>cfg.model                = 'regional';      <br>
</div>
<div>cfg.senstype           = 'eeg';            <br>
</div>
<div>cfg.channel             = 'all';           <br>
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<div>cfg.nonlinear          = 'yes';            <br>
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<div>cfg.latency              = late_latency;     <br>
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<span>dipole_eeg_late = ft_dipolefitting(cfg, timelockeds{4});</span><br>
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<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span>Best regards,</span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span>Martin</span></div>
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<font color="#333333" size="1"><span lang="en-US" style="margin:0px"><span style="color:rgb(118,113,113); font-family:Calibri,sans-serif; font-size:12px; text-align:left; background-color:rgb(255,255,255); display:inline!important">------------</span><br>
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<font color="#333333" size="1"><span lang="en-US" style="margin:0px"><b>Martin Schaefer | </b></span></font><span style="font-family:Tahoma; font-size:x-small">PhD Student</span></p>
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<font color="#333333" size="1"><span style="font-family:Tahoma; font-size:x-small; background-color:rgb(255,255,255); display:inline!important"><a href="https://www.perceptionlab.se/">https://www.perceptionlab.se/</a><br>
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<font color="#333333" size="1">Department of Clinical Neuroscience (CNS), K8</font></p>
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<font color="#333333" size="1">Karolinska Institutet | 17 177 Stockholm | Nobels väg 9</font></p>
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<span lang="en-US" style="margin:0px"><font color="gray" size="1">______________________________________<br>
Karolinska Institutet – a Medical University</font></span></p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> fieldtrip <fieldtrip-bounces@science.ru.nl> on behalf of Schoffelen, J.M. (Jan Mathijs) <jan.schoffelen@donders.ru.nl><br>
<b>Sent:</b> Wednesday, July 1, 2020 4:45 PM<br>
<b>To:</b> FieldTrip discussion list <fieldtrip@science.ru.nl><br>
<b>Subject:</b> Re: [FieldTrip] Potential bug using ft_dipolefitting with fieldtrip-20200623</font>
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<div class="" style="word-wrap:break-word; line-break:after-white-space">Dear Martin,
<div class=""><br class="">
</div>
<div class="">Thanks for your message. Sorry to hear that you experience some issues. ft_dipolefitting has received a facelift recently, so it could be that the issue you report is a genuine problem. On the other hand, it could also be that something unexpected
 happens due to an unexpected feature in your data, which causes an error in the changed code. Our battery of test functions apparently ran through just fine, causing the changed function to percolate into the relase version of the codebase. Yet, our tests
 are not exhaustive, and it could be that there are user scenarios that we haven’t thought of.</div>
<div class=""><br class="">
</div>
<div class="">In order to be able to make the distinction between a genuine bug, and an interaction between features-of-the-specific-usecase and the updated code, could you investigate a bit more what’s going on, using the matlab debugger? If you put a breakpoint
 in the code on line 442 (or so), or type ‘dbstop if error’ on the matlab command line, and then execute ft_dipolefitting again, you should be able to investigate the content of the variables. Specifically, it would be interesting to know what the content is
 of the ‘sourcemodel' variable, as well as whether the variable ‘indx’ is properly created on line 442.</div>
<div class=""><br class="">
</div>
<div class="">Alternatively, you could send us some data (essentially the timelockds{4} + leadfield_eeg + headmodel_eeg which would allow us to reproduce the issue and, if needed, make a fix.</div>
<div class=""><br class="">
</div>
<div class="">Best wishes,</div>
<div class="">Jan-Mathijs</div>
<div class=""><br class="">
</div>
<div class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On 1 Jul 2020, at 13:35, Martin Schaefer <<a href="mailto:martin.schaefer@ki.se" class="">martin.schaefer@ki.se</a>> wrote:</div>
<br class="x_Apple-interchange-newline">
<div class="">
<div class="" style="font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">
Dear all,</div>
<div class="" style="font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">
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I ran into the following error message when calling the ft_dipolefitting function on my data:</div>
<div class="" style="font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">
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<blockquote class="" style="font-family:Helvetica; font-size:14px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; text-decoration:none; border-left-width:3px; border-left-style:solid; border-color:rgb(200,200,200); padding-left:1ex; margin-left:0.8ex; color:rgb(102,102,102)">
<div class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">
<span class="">Error using reshape<br class="">
</span>
<div class="">Number of elements must not change. Use [] as one of the size inputs to automatically calculate the appropriate size for that dimension.<br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Error in ft_dipolefitting (line 444)<br class="">
</div>
<div class="">      dip.pos = reshape(dip.pos,3,cfg.numdipoles)';     % convert to a Nx3 array<br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Error in dipole_fitting (line 152)<br class="">
</div>
<span class="">dipole_eeg_late = ft_dipolefitting(cfg, timelockeds{4});</span><br class="">
</div>
</blockquote>
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<br class="">
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My cfg commands:</div>
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<blockquote class="" style="border-left-width:3px; border-left-style:solid; border-color:rgb(200,200,200); padding-left:1ex; margin-left:0.8ex; color:rgb(102,102,102)">
<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); font-size:10pt">cfg = [];</span><span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)"><br class="">
</span>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.gridsearch         = 'yes';            </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.numdipoles      = 1;                </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.symmetry         = [];              </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.grid                    = leadfield_eeg;    </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.headmodel      = headmodel_eeg;    </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.dipfit.metric    = 'rv';             </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.model               = 'regional';       </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.senstype          = 'eeg';           </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.channel           = 'all';            </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.nonlinear        = 'yes';            </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.latency             = early_latency;    </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<span class="" style="font-size:10pt">cfg.backproject     = 'yes';            </span><br class="">
</div>
<div class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">
<br class="">
</div>
<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); font-size:10pt">dipole_eeg_early = ft_dipolefitting(cfg, timelockeds{4});</span><br class="">
</blockquote>
</div>
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<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">However, the code runs fine on an older version of fieldtrip (the one used during the last online fieldtrip workshop, I think it is from 16-04-2020).</span></div>
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<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">So I'm not sure whether there is a bug in one of the versions or something else is wrong.</span></div>
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<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">Does anyone else have issues with this?</span></div>
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<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">Best regards,</span></div>
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<span class="" style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255)">Martin</span></div>
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<font color="#333333" size="1" class=""><span lang="en-US" class="" style="margin:0px"><span class="" style="color:rgb(118,113,113); font-family:Calibri,sans-serif; font-size:12px; text-align:left; background-color:rgb(255,255,255); display:inline!important">------------</span><br class="">
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<font color="#333333" size="1" class=""><span lang="en-US" class="" style="margin:0px"><b class="">Martin Schaefer | </b></span></font><span class="" style="font-family:Tahoma; font-size:x-small">PhD Student</span></div>
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<font color="#333333" size="1" class=""><span class="" style="font-family:Tahoma; font-size:x-small; background-color:rgb(255,255,255); display:inline!important"><a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.perceptionlab.se%2F&data=02%7C01%7Cmartin.schaefer%40ki.se%7C268947d09a27414b01c008d81dcd9bba%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637292116200198856&sdata=w9gFEvzSeKwxySOWwnCbR9%2F%2BzWXWeBTjVi1KFq9oJUY%3D&reserved=0" originalsrc="https://www.perceptionlab.se/" shash="S64WTaqSnlX+rcOPn7W4At+Ff1OHiEvbpFcdy96/dKYXJ0GRRoK8zlEl+F2rX6T4HM6SIX2XA9aoutnEcjP8ZB8yV7hAkvudLVtYvKdikDsZL2ufrFBtoYiOErWEv9xCnVV9xwnz369AcgFRFYOdkbmlGsECQuskcgUDwic2snU=" class="">https://www.perceptionlab.se/</a><br class="">
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<font color="#333333" size="1" class="">Department of Clinical Neuroscience (CNS), K8</font></div>
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<font color="#333333" size="1" class="">Karolinska Institutet | 17 177 Stockholm | Nobels väg 9</font></div>
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<span lang="en-US" class="" style="margin:0px"><font color="gray" size="1" class=""><a href="mailto:artin.arshamian@ki.se" target="_blank" rel="noopener noreferrer" class="" style="margin:0px">martin.schaefer@ki.se</a></font></span></div>
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<span lang="en-US" class="" style="margin:0px"><font color="gray" size="1" class="">______________________________________<br class="">
Karolinska Institutet – a Medical University</font></span></div>
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<span class="x_s1" style=""><i class="">När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter.<span class="x_Apple-converted-space"> </span></i><a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fki.se%2Fmedarbetare%2Fintegritetsskyddspolicy&data=02%7C01%7Cmartin.schaefer%40ki.se%7C268947d09a27414b01c008d81dcd9bba%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637292116200198856&sdata=76Of3%2BtLi%2Bzl1prxLy9H0TyY73mCg9kZ6Q%2BfDiTK5Kg%3D&reserved=0" originalsrc="https://ki.se/medarbetare/integritetsskyddspolicy" shash="cdZB/lHsjAFKhFAnY7Wzf7ptAE+I0KQXm0t1gXJMgCKwlB+Ir9cHom9U6/ZtUeyxX3wWbcm2o5xYnnpnzTeoQZGXhtmacBUWEqaoRRFh/zHSjIyGDgbF5/6ekErDf3NozqIQIeDadcWcH14/HTqegwdrp8nT4xlWeQWqt6WbxvE=" class=""><span class="x_s2" style="text-decoration:underline; color:rgb(0,0,238)">Här
 finns information om hur KI behandlar personuppgifter</span></a>.<span class="x_Apple-converted-space"> </span></span></div>
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<span class="x_s1" style=""><i class="">Sending email to Karolinska Institutet (KI) will result in KI processing your personal data.</i><span class="x_Apple-converted-space"> </span><a href="https://ki.se/en/staff/data-protection-policy" class=""><span class="x_s2" style="text-decoration:underline; color:rgb(0,0,238)">You
 can read more about KI’s processing of personal data here</span></a>.<span class="x_Apple-converted-space"> </span></span></div>
<span class="" style="font-family:Helvetica; font-size:14px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; float:none; display:inline!important">_______________________________________________</span><br class="" style="font-family:Helvetica; font-size:14px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
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<a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailman.science.ru.nl%2Fmailman%2Flistinfo%2Ffieldtrip&data=02%7C01%7Cmartin.schaefer%40ki.se%7C268947d09a27414b01c008d81dcd9bba%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637292116200208851&sdata=9kimEP3jV2bmlS5CpYcqxlK8%2BzedF4XM4pAyH8%2FL8Zs%3D&reserved=0" originalsrc="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" shash="fa6Fi7zORrFBNH0IWx/VEcZ+m8m2lfiuWe5EUH+MSkLFOuq93yVN47OGj7Jz7YtS+dyEu0/aj1QwtHoj0iKH4WWsKW0Jx2ww6dtQSqBk99o9dsTuxS4ZohsprUS3FA4GtYGiBRPNvGfuZwmoRToJARM0AqPkA53yAJbZwgUnQaQ=" class="" style="font-family:Helvetica; font-size:14px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br class="" style="font-family:Helvetica; font-size:14px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.1371%2Fjournal.pcbi.1002202&data=02%7C01%7Cmartin.schaefer%40ki.se%7C268947d09a27414b01c008d81dcd9bba%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637292116200208851&sdata=F5vmA1DY7S9UMGt1Y94bw%2Bxt9NOn3oGatMKPIZ3zEMU%3D&reserved=0" originalsrc="https://doi.org/10.1371/journal.pcbi.1002202" shash="vUw/qdjd0svnES6t+vWFlNNs2CoTIJMdaJfhvREis4IS+8SbHfczmhU5J0UaupBAUhjzLMDEA3Zmg44lxqUcB5MOgYpC9hFPUev6dDzefdzz4yYRmdJaMIuS7GTQE62HzHEZw8xGHzMlt6SrLZGX98NWCLGj3cV2FfZA8xJxG4E=" class="" style="font-family:Helvetica; font-size:14px; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">https://doi.org/10.1371/journal.pcbi.1002202</a></div>
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