<div dir="ltr">Dear all, <div>I would first like to thank Jan-Mathijs for the massive work on the mesh sourcemodel.</div><div>I encountered a couple of minor issues while implementing the whole process:</div><div><br></div><div>1. In some subjects, after saving the .mgz file with Fieldtrip (including acpc coordinates and reference point), the image is slightly shifted towards the superior side of the frame by mriconvert (<span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">mri_convert</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="gmail-o" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(102,102,102)">-</span><span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">c</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="gmail-o" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(102,102,102)">-</span><span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">oc</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="gmail-mi" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(64,160,112)">0</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="gmail-mi" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(64,160,112)">0</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="gmail-mi" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(64,160,112)">0</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="err" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;border:1px solid rgb(255,0,0)">$</span><span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">SUBJECTNAME</span><span class="gmail-o" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(102,102,102)">.</span><span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">mgz</span><span style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240)"> </span><span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">orig</span><span class="gmail-o" style="font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box;color:rgb(102,102,102)">.</span><span class="gmail-n" style="color:inherit;font-family:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace;font-size:inherit;background-color:rgb(240,240,240);box-sizing:border-box">mgz</span>). This implies that the upper part of the brain is being chopped and the further segmentation process with recon -all makes no sense anymore. Has anyone the same issue?</div><div><br></div><div>2. As far as I understand, an average, atlas-mapped mesh where to visualize pooled results is not generated. What would be a straightforward way of visualizing group results in standard coordinates? </div><div><br></div><div>Best wishes,</div><div><br></div><div>Paolo</div><div><div><br></div>-- <br><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div>--<br>Paolo Belardinelli, PhD<br>Neurology Department<br>
University Hospital Tuebingen<br>

Eberhard Karls University Tuebingen<br>
Hoppe-Seyler Str. 3<br>
D-72076 Tuebingen<br>
Tel: <a value="+4970712985894">+49 7071 / 29 80478</a><br><br></div></div></div></div></div>