<meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr"><div class="gmail_default" style="font-family:georgia,serif">function [parcel_out, labels] = parcellate(template, atlas)<br><br> atlas = ft_convert_units(atlas,'cm');<br> wanted_parcels = [1, 2, 19, 20, 29, 30, 57, 58];<br><br> for i = 1:length(wanted_parcels)<br> cfg = [];</div><div class="gmail_default" style="font-family:georgia,serif"> cfg.atlas = atlas;</div><div class="gmail_default" style="font-family:georgia,serif"> cfg.roi = atlas.tissuelabel{wanted_parcels(i)};</div><div class="gmail_default" style="font-family:georgia,serif"> labels{i} = atlas.tissuelabel{wanted_parcels(i)};</div><div class="gmail_default" style="font-family:georgia,serif"> cfg.inputcoord = atlas.coordsys;</div><div class="gmail_default" style="font-family:georgia,serif"> tmp_mask = ft_volumelookup(cfg,template);</div><div class="gmail_default" style="font-family:georgia,serif"> tmp_mask = reshape(tmp_mask, [numel(tmp_mask), 1]);</div><div class="gmail_default" style="font-family:georgia,serif"> inside_parcels = tmp_mask .* template.inside;</div><div class="gmail_default" style="font-family:georgia,serif"> source_indexes = find(inside_parcels);</div><div class="gmail_default" style="font-family:georgia,serif"> parcel_out{i} = source_indexes;</div><div class="gmail_default" style="font-family:georgia,serif"> end<br><br>end<br></div><div class="gmail_default" style="font-family:georgia,serif"><br></div><div class="gmail_default" style="font-family:georgia,serif">-----------------------------------------------------------------</div><div class="gmail_default" style="font-family:georgia,serif"><br></div><div class="gmail_default" style="font-family:georgia,serif">atlas = ft_read_atlas('fieldtrip-20181025/template/atlas/aal/ROI_MNI_V4.nii');</div><div class="gmail_default" style="font-family:georgia,serif">atlas = ft_convert_units(atlas,'cm');<br>[parcels, labels] = parcellate(sourcemodel, atlas);</div><div class="gmail_default" style="font-family:georgia,serif"><br></div><div class="gmail_default" style="font-family:georgia,serif"><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Jul 15, 2019 at 2:05 PM Velden, Daniel <<a href="mailto:daniel.velden@med.uni-goettingen.de">daniel.velden@med.uni-goettingen.de</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<p class="MsoNormal">Hi Mohammad,<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal"><span lang="EN-US">based on your code it’s hard to tell a thing. Would you please provide us with more of your code to evaluate your problem.
<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US">Greetings<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US">Daniel van de Velden<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="color:rgb(166,166,166)">------------------------------------------------</span><span style="color:rgb(166,166,166)"><u></u><u></u></span></p>
<p class="MsoNormal" style="line-height:12pt"><span style="font-size:10pt;color:black"><u></u> <u></u></span></p>
<p class="MsoNormal" style="line-height:12pt"><i><span style="font-size:10pt;color:rgb(54,95,145)">Daniel van de Velden (M.Sc.) || PhD candidate<u></u><u></u></span></i></p>
<p class="MsoNormal" style="line-height:12pt"><i><span style="font-size:10pt;color:rgb(54,95,145)">Wissenschaftlicher Mitarbeiter<u></u><u></u></span></i></p>
<p class="MsoNormal" style="line-height:12pt"><i><span style="font-size:10pt;color:rgb(54,95,145)">Klinik für Klinische Neurophysiologie
<u></u><u></u></span></i></p>
<p class="MsoNormal" style="line-height:12pt"><i><span style="font-size:10pt;color:rgb(54,95,145)">Georg-August-Universität Göttingen<u></u><u></u></span></i></p>
<p class="MsoNormal" style="line-height:12pt"><i><span style="font-size:10pt;color:rgb(54,95,145)">Robert-Koch.Str. 40, 37075 Göttingen<u></u><u></u></span></i></p>
<p class="MsoNormal" style="line-height:12pt"><i><span lang="EN-US" style="font-size:10pt;color:rgb(54,95,145)">Tel. 0551- 39-65106<u></u><u></u></span></i></p>
<p class="MsoNormal"><u></u> <u></u></p>
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