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Dear Paolo,
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<div class="">As you know, FieldTrip relies on external packages (e.g. freesurfer and spm) for structural image processing. I suggest you look there for examples of how to incorporate T2 images to improve skull segmentation. We are looking forward to a tutorial
document that describes such pipeline for Fieldtrip users. This can be submitted as a Pull Request on the website github repository:
<a href="https://github.com/fieldtrip/website" class="">https://github.com/fieldtrip/website</a>.</div>
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<div class="">Best wishes,</div>
<div class="">Jan-Mathijs</div>
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<div class="">On 26 May 2019, at 17:49, Paolo Belardinelli <<a href="mailto:paolo.belardinelli@gmail.com" class="">paolo.belardinelli@gmail.com</a>> wrote:</div>
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<div dir="ltr" class="">Hi Jan.
<div class="">thank you for your answer.<br class="">
<div class="">We acquired both T1w and T2w images. </div>
<div class="">There is no way of taking advantage of both, in the making of the sourcemodel mesh along the fiieldtrip pipeline, right?</div>
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<div class=""><a href="http://www.fieldtriptoolbox.org/tutorial/sourcemodel/" class="">http://www.fieldtriptoolbox.org/tutorial/sourcemodel/</a></div>
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<div class="">Best wishes,</div>
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<div class="">Paolo</div>
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<div dir="ltr" class="gmail_attr">On Sun, May 26, 2019 at 5:35 PM Schoffelen, J.M. (Jan Mathijs) <<a href="mailto:jan.schoffelen@donders.ru.nl" class="">jan.schoffelen@donders.ru.nl</a>> wrote:<br class="">
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<div style="overflow-wrap: break-word;" class="">Hi Paolo,
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<div class="">ft_read_mri is just a generic function that reads in volumetrically represented data that comes off an mri machine. It does not care about the acquisition parameters.</div>
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<div class="">Best wishes,</div>
<div class="">Jan-Mathijs</div>
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<div class="">On 26 May 2019, at 15:46, Paolo Belardinelli <<a href="mailto:paolo.belardinelli@gmail.com" target="_blank" class="">paolo.belardinelli@gmail.com</a>> wrote:</div>
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<div dir="ltr" class="">Dear FieldTrippers,
<div class="">is there a way to process simultaneously T1w and T2w MR images in Fieldtrip (in line with the mri2mesh function of SimNibs)? To my understanding this is currently not possible with ft_read_mri. Am I wrong?</div>
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<div class="">Best,</div>
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<div class="">Paolo Belardinelli<br class="">
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-- <br class="">
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<div class="">--<br class="">
Paolo Belardinelli, PhD<br class="">
Neurology Department<br class="">
University Hospital Tuebingen<br class="">
Eberhard Karls University Tuebingen<br class="">
Hoppe-Seyler Str. 3<br class="">
D-72076 Tuebingen<br class="">
Tel: <a value="+4970712985894" class="">+49 7071 / 29 80478</a><br class="">
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-- <br class="">
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<div class="">--<br class="">
Paolo Belardinelli, PhD<br class="">
Neurology Department<br class="">
University Hospital Tuebingen<br class="">
Eberhard Karls University Tuebingen<br class="">
Hoppe-Seyler Str. 3<br class="">
D-72076 Tuebingen<br class="">
Tel: <a value="+4970712985894" class="">+49 7071 / 29 80478</a><br class="">
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