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<div>Hi Darren,</div>
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<div>there is also the excellent JIDT (Java information dynamics toolkit) by Joe Lizier, which comes with MATLAB/octave wrappers: <a href="https://github.com/jlizier/jidt" target="_blank">https://github.com/jlizier/jidt</a></div>
<div> </div>
<div>There is even a demo for the quick calculation of TE from two time series: <a href="https://github.com/jlizier/jidt/blob/master/demos/octave/example4TeContinuousDataKraskov.m" target="_blank">https://github.com/jlizier/jidt/blob/master/demos/octave/example4TeContinuousDataKraskov.m</a></div>
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<div>Hope this helps!</div>
<div> </div>
<div>Best,</div>
<div>Patricia</div>
<div> </div>
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<div style="margin: 0 0 10.0px 0;"><b>Gesendet:</b> Donnerstag, 02. August 2018 um 15:42 Uhr<br/>
<b>Von:</b> "Darren Price" <Darren.Price@mrc-cbu.cam.ac.uk><br/>
<b>An:</b> "fieldtrip@science.ru.nl" <fieldtrip@science.ru.nl><br/>
<b>Betreff:</b> [FieldTrip] Transfer entropy</div>
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<p class="MsoNormal">Hi All</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Could anyone suggest the tools for computing transfer entropy in Matlab? I had a look at MuTE toolbox, but that seemed overly complicated, and I couldn’t even get the example to work. I’m currently looking at TRENTTOOL which looks good and works with fieldtrip format. I will also try “phase transfer entropy”, which is a single matlab function and simple to implement.</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Any other suggestions or comments / experiences with those above would be very helpful.</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">To begin with I would simply like to check for information transfer between two timeseries. I may also check for indirect serial transfer i.e. A>B>C</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Thanks</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Darren</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"><span>-------------------------------------------------------</span></p>
<p class="MsoNormal"><span>Dr. Darren Price</span></p>
<p class="MsoNormal"><span>Research Associate</span></p>
<p class="MsoNormal"><span>MRC Cognition & Brain Sciences Unit</span></p>
<p class="MsoNormal"><span>15 Chaucer Road</span></p>
<p class="MsoNormal"><span>Cambridge, CB2 7EF</span></p>
<p class="MsoNormal"><span>England </span></p>
<p class="MsoNormal"><span>EMAIL: darren.price@mrc-cbu.cam.ac.uk</span></p>
<p class="MsoNormal"><span>URL: <a href="http://www.mrc-cbu.cam.ac.uk/people/darren.price" target="_blank"> <span style="color: windowtext;text-decoration: none;">http://www.mrc-cbu.cam.ac.uk/people/darren.price</span></a></span></p>
<p class="MsoNormal"><span>TEL +44 (0)1223 355 294 x202</span></p>
<p class="MsoNormal"><span>FAX +44 (0)1223 359 062</span></p>
<p class="MsoNormal"><span>MOB +44 (0)7717822431</span></p>
<p class="MsoNormal"><span>-------------------------------------------------------</span></p>
<p class="MsoNormal"> </p>
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_______________________________________________ fieldtrip mailing list <a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a> <a href="https://doi.org/10.1371/journal.pcbi.1002202" target="_blank">https://doi.org/10.1371/journal.pcbi.1002202</a></div>
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