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<span style="font-size: 15px;" class="">In that case I recommend that you try and interpret the error message in a bit more detail. From the information you provide nobody can tell what’s going on, apart from the fact that it is a low-level matlab error. I
suggest to use the matlab debugger to investigate the size of ‘<font face="Calibri, sans-serif" class="">meanreshapeddat', and the value of ‘nchan’ ‘nfreq’ ‘nrepl’ ‘ntime’ in this specific case.</font></span>
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</span></font></div>
<div class=""><font face="Calibri, sans-serif" class=""><span style="font-size: 14.666666984558105px;" class="">And also think about your specification of cfg.latency. Note that you only include positive latencies to be tested, but you ask for actvsblT as a
test statistic, which name suggests to use a baseline (i.e. require latencies of < 0 in the data).</span></font></div>
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</span></font></div>
<div class=""><font face="Calibri, sans-serif" class=""><span style="font-size: 14.666666984558105px;" class="">JM</span></font></div>
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</span></font></div>
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<blockquote type="cite" class="">
<div class="">On 6 Sep 2017, at 18:43, David <<a href="mailto:preted@mcmaster.ca" class="">preted@mcmaster.ca</a>> wrote:</div>
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Hi Jan-Mathijs,<span class="Apple-converted-space"> </span></div>
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I’ve double checked and the label is written as ‘CZ’. So, it seems to be more than a typo, unfortunately.</div>
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David</div>
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<b class="">From:<span class="Apple-converted-space"> </span></b><a href="mailto:fieldtrip-request@science.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">fieldtrip-request@science.ru.nl</a><br class="">
<b class="">Sent:<span class="Apple-converted-space"> </span></b>September 6, 2017 12:26 PM<br class="">
<b class="">To:<span class="Apple-converted-space"> </span></b><a href="mailto:fieldtrip@science.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">fieldtrip@science.ru.nl</a><br class="">
<b class="">Subject:<span class="Apple-converted-space"> </span></b>fieldtrip Digest, Vol 82, Issue 8</div>
</div>
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<o:p class=""> </o:p></div>
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Send fieldtrip mailing list submissions to</div>
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To subscribe or unsubscribe via the World Wide Web, visit</div>
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or, via email, send a message with subject or body 'help' to</div>
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You can reach the person managing the list at</div>
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<span class="Apple-converted-space"> </span><a href="mailto:fieldtrip-owner@science.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">fieldtrip-owner@science.ru.nl</a></div>
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<o:p class=""> </o:p></div>
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When replying, please edit your Subject line so it is more specific</div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
than "Re: Contents of fieldtrip digest..."</div>
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Today's Topics:</div>
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1. Re: Reshape Error Using ft_freqstatistics</div>
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(Schoffelen, J.M. (Jan Mathijs))</div>
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2. Cluster-based permutation tests for 3 conditions (????)</div>
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3. Re: Learning agreementbuybr 8 (STEPHAN MORATTI)</div>
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----------------------------------------------------------------------</div>
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Message: 1</div>
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Date: Wed, 6 Sep 2017 15:18:53 +0000</div>
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From: "Schoffelen, J.M. (Jan Mathijs)" <<a href="mailto:jan.schoffelen@donders.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">jan.schoffelen@donders.ru.nl</a>></div>
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To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>></div>
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Subject: Re: [FieldTrip] Reshape Error Using ft_freqstatistics</div>
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Message-ID: <<a href="mailto:0DE2CF55-749C-4F63-9DFA-FE226A971570@donders.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">0DE2CF55-749C-4F63-9DFA-FE226A971570@donders.ru.nl</a>></div>
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Content-Type: text/plain; charset="utf-8"</div>
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Hi David,</div>
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Have you checked whether this could be due to a potential typo in the specification of your cfg.channel (e.g.: CZ versus Cz)?</div>
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Best,</div>
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Jan-Mathijs</div>
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On 6 Sep 2017, at 16:48, David <<a href="mailto:preted@mcmaster.ca" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">preted@mcmaster.ca</a><<a href="mailto:preted@mcmaster.ca" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">mailto:preted@mcmaster.ca</a>>>
wrote:</div>
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Hello everyone,</div>
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I am running into an error when I try to compute the cluster based permutation test in the frequency-time domain comparing baseline to when the stimulus is present. I?ve calculated the power for 300 milliseconds (1 millisecond is equal to one time point) before
the onset of the stimulus and 300ms during the stimulus for a range of 10 frequencies. The error I?m running into is stated below as well as my code and I?ve attached an image of what the data looks like. I?ve tried following the tutorials and searching through
the mailing list and can?t seem to find a solution. Has anyone else run into this problem and found a solution or am I making an error somewhere in my analysis?</div>
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MY CODE:</div>
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cfg = [];</div>
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cfg.channel = 'CZ';</div>
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cfg.latency = [0.1 0.4];</div>
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cfg.method = 'montecarlo';</div>
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cfg.frequency = 'all';</div>
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cfg.statistic = 'ft_statfun_actvsblT';</div>
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cfg.correctm = 'cluster';</div>
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cfg.clusteralpha = 0.05;</div>
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cfg.clusterstatistic = 'maxsum';</div>
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cfg.tail = 0;</div>
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cfg.clustertail = 0;</div>
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cfg.alpha = 0.025;</div>
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cfg.numrandomization = 500;</div>
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ntrials = size(TFR_FFR.powspctrm,1);</div>
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design = zeros(2,2*ntrials);</div>
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design(1,1:ntrials) = 1;</div>
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design(1,ntrials+1:2*ntrials) = 2;</div>
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design(2,1:ntrials) = [1:ntrials];</div>
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design(2,ntrials+1:2*ntrials) = [1:ntrials];</div>
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cfg.design = design;</div>
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cfg.ivar = 1;</div>
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cfg.uvar = 2;</div>
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TFR_FFR_stat = ft_freqstatistics(cfg, TFR_FFR, TFR_FFRbaseline);</div>
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THE ERROR MESSAGE:</div>
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?Error using reshape</div>
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To RESHAPE the number of elements must not change.</div>
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Error in ft_statfun_actvsblT (line 115)</div>
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timeavgdat=repmat(reshape(meanreshapeddat,(nchan*nfreq),nrepl),ntime,1);</div>
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Error in ft_statistics_montecarlo (line 267)</div>
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[statobs, cfg] = statfun(cfg, dat, design);</div>
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Error in ft_freqstatistics (line 194)</div>
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[stat, cfg] = statmethod(cfg, dat, design);</div>
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Error in TFRClusterBasedStats (line 54)</div>
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TFR_FFR_stat = ft_freqstatistics(cfg, TFR_FFR,</div>
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TFR_FFRbaseline);?</div>
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Thank you,</div>
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David Prete</div>
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Ph.D. Candidate</div>
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McMaster Institute for Music and the Mind</div>
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Department Psychology, Neuroscience and Behaviour</div>
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McMaster University</div>
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<Screenshot (16).png>_______________________________________________</div>
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Message: 2</div>
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Date: Thu, 7 Sep 2017 00:57:17 +0900</div>
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From: ???? <<a href="mailto:tokimoto@mejiro.ac.jp" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">tokimoto@mejiro.ac.jp</a>></div>
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To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>></div>
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Subject: [FieldTrip] Cluster-based permutation tests for 3 conditions</div>
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Message-ID: <<a href="mailto:EF1907A8-7606-4B65-B3BB-CCEC15C62DA8@mejiro.ac.jp" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">EF1907A8-7606-4B65-B3BB-CCEC15C62DA8@mejiro.ac.jp</a>></div>
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Dear FieldTrip users,</div>
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I usually perform cluster-based permutation tests for my EEG analyses. The test is exact and useful, and I am deeply grateful for the developers. I understand permutation tests are a test between two conditions. However, I have realized that the test results
can be presented for the comparison of three conditions, as is shown by the attached file. I usually perform the test from the GUI of EEGLAB. Could anyone tell me how I should understand the test results? Thank you in advance.</div>
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Shingo Tokimoto, Ph.D.</div>
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in Linguistics and Psychology</div>
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Department of Foreign Languages</div>
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Mejiro University</div>
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4-31-1, Naka-Ochiai, Shinjuku, Tokyo,</div>
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161-8539, Japan</div>
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<a href="mailto:tokimoto@mejiro.ac.jp" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">tokimoto@mejiro.ac.jp</a></div>
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Message: 3</div>
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Date: Wed, 6 Sep 2017 18:25:54 +0200</div>
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From: STEPHAN MORATTI <<a href="mailto:smoratti@psi.ucm.es" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">smoratti@psi.ucm.es</a>></div>
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To: SARA RODRIGUEZ FREGENAL <<a href="mailto:srodri10@ucm.es" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">srodri10@ucm.es</a>>, FieldTrip discussion</div>
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list <<a href="mailto:fieldtrip@science.ru.nl" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">fieldtrip@science.ru.nl</a>></div>
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Subject: Re: [FieldTrip] Learning agreementbuybr 8</div>
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Message-ID:</div>
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<<a href="mailto:CAE20z9KE=FQERSC+-EPn=7cNrk53NpdWgh=gUrTg=64t5-MoxA@mail.gmail.com" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">CAE20z9KE=FQERSC+-EPn=7cNrk53NpdWgh=gUrTg=64t5-MoxA@mail.gmail.com</a>></div>
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C ck</div>
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El 5 sept. 2017 14:37, "SARA RODRIGUEZ FREGENAL" <<a href="mailto:srodri10@ucm.es" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">srodri10@ucm.es</a>> escribi?:</div>
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Buenos d?as Stephan,</div>
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Soy una de tus tuteladas del Erasmus en Glasgow. Tuve que cambiar unas</div>
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cosas en el learning agreement y me piden que me lo vuelvas a firmar.</div>
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?Ser?as tan amable de envi?rmelo firmado?</div>
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Gracias y perd?n por las molestias,</div>
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Sara</div>
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_______________________________________________</div>
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fieldtrip mailing list</div>
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<a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a></div>
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End of fieldtrip Digest, Vol 82, Issue 8</div>
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