<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Dear Giorgos,
<div class=""><br class="">
</div>
<div class="">I’d recommend using hcp-workbench or Caret. </div>
<div class=""><br class="">
</div>
<div class="">Caret is the predecessor of hcp-workbench and not actively maintained anymore, but the procedure should still work. It’s documented here:</div>
<div class=""><br class="">
</div>
<div class=""><a href="http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/Freesurfer_to_fs_LR" class="">http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/Freesurfer_to_fs_LR</a></div>
<div class=""><br class="">
</div>
<div class="">Better still would be to adopt the state of the art, and use hcp-workbench in combination with the appropriate parts of the following script:</div>
<div class=""><br class="">
</div>
<div class=""><a href="https://github.com/Washington-University/Pipelines/blob/master/PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh" class="">https://github.com/Washington-University/Pipelines/blob/master/PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh</a></div>
<div class=""><br class="">
</div>
<div class="">This latter option is probably a bit more tricky to adapt to your situation.</div>
<div class=""><br class="">
</div>
<div class="">Best,</div>
<div class=""><br class="">
</div>
<div class="">Jan-Mathijs</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
<div>
<blockquote type="cite" class="">
<div class="">On 02 Jun 2016, at 23:15, george michael <<a href="mailto:gmichael_@hotmail.com" class="">gmichael_@hotmail.com</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div dir="ltr" style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
Dear Fieldtrip Community,<br class="">
<br class="">
<span dir="ltr" class=""><font size="3" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 12pt; background-color: white;" class=""><font face="Calibri,Arial,Helvetica,sans-serif" class="">
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class="">We are analysing the ERF with NeuromakElekta data and our goal is to do group-analysis on the
minimum norm estimates corresponding to the ERF data.</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class=""><br class="">
</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class="">We have combined the use of freesurfer and MNE to segment the individual MRI-images, etc, and
create the cortical meshes (<font face="Calibri,Arial,Helvetica,sans-serif" class="">subj-oct-6-src.fif)</font>. Coregistration of MRI-MEG data was also done with those tools.</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class=""><br class="">
</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class="">We have used FieldTrip to process the functional data and estimate the minimum norm estimates
in the individual subject space. </span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class=""><br class="">
</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class="">Does somebody have a suggestion for how to morph the single-subject minimum norm estimates into
a common standard template using FieldTrip? (i.e. cortex_8196.surf.gii)<span class="Apple-converted-space"> </span><br class="">
</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class="">The goal would be to do group analysis in the common space.</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class=""><br class="">
</span></font></div>
<div style="margin-top: 0px; margin-bottom: 0px;" class=""><font size="2" face="Calibri,Arial,Helvetica,sans-serif" class=""><span style="font-size: 16px;" class="">Thanks in advance.<br class="">
<br class="">
Best Regards,<br class="">
Giorgos Michail<br class="">
<br class="">
Research Assistant<br class="">
Department of Neurology<br class="">
Charite Medical University, Berlin<br class="">
</span></font></div>
</font></span></font></span></div>
<span style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">_______________________________________________</span><br style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">fieldtrip
mailing list</span><br style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="mailto:fieldtrip@donders.ru.nl" style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">fieldtrip@donders.ru.nl</a><br style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="font-family: Calibri; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a></div>
</blockquote>
</div>
<br class="">
</div>
</body>
</html>