<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><div style="margin: 0px;" class=""><font face="Courier" class="">Dear Field Trip Users, </font></div><div style="margin: 0px;" class=""><font face="Courier" class=""><br class=""></font></div><div style="margin: 0px;" class=""><font face="Courier" class=""><br class=""></font></div><div style="margin: 0px;" class=""><font face="Courier" class="">The Field Trip topoplot function ft_topoplotTFR(cfg, grandavg) used to work on Matlab 2011, but gives the following error message in Matlab 2014b:</font></div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">%%%%%%%%%%</div><div class="">Error using sprintf</div><div class="">Function is not defined for 'matlab.ui.Figure' inputs.</div><div class=""><br class=""></div><div class="">Error in topoplot_common (line 862)</div><div class=""> set(gcf, 'Name', sprintf('%d: %s: %s', gcf, funcname, join_str(', ',dataname)));</div><div class=""><br class=""></div><div class="">Error in ft_topoplotTFR (line 191)</div><div class="">[cfg] = topoplot_common(cfg, varargin{:});</div><div class=""> %%%%%%%</div><div class=""><br class=""></div><div class="">This is arises change to the way Matlab does Figures I believe? </div><div class=""><br class=""></div><div class="">Is the easiest thing to download the newer version of Fieldtrip? </div><div class=""><br class=""></div><div class="">Thanks for any advice, </div><div class=""><br class=""></div><div class="">Cheers</div><div class=""><br class=""></div><div class="">Alexis Makin, University of Liverpool, Uk</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div><blockquote type="cite" class=""><div class="">On 13 Nov 2015, at 08:51, Julian Keil <<a href="mailto:julian.keil@gmail.com" class="">julian.keil@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><base href="x-msg://12/" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class="">Hi Iris,<div class=""><br class=""></div><div class="">I'm not sure what you want to do with the p-values in the following, but you can multiply your (FDR-corrected) mask with the prob.</div><div class="">This would look like this: stat_TF.prob_new = stat_TF.prob .* stat_TF.mask;</div><div class=""><br class=""></div><div class="">Now you only have the significant p-values left in your prob_new-field, everything else is set to 0.</div><div class=""><br class=""></div><div class="">Hope this helps</div><div class=""><br class=""></div><div class="">Julian</div><div class=""><br class=""><div class="">
<span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; border-spacing: 0px; font-size: inherit;"><div class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; font-size: 12px; " class="">********************</div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><b class="">Dr. Julian Keil</b></div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><b class=""><br class=""></b></div>AG Multisensorische Integration<br class="">Psychiatrische Universitätsklinik<br class="">der Charité im St. Hedwig-Krankenhaus<br class="">Große Hamburger Straße 5-11, Raum A007<br class="">10115 Berlin</div><div class=""><br class="">Telefon: +49-30-2311-1879<br class="">Fax: +49-30-2311-2209 </div><div class=""><a href="http://psy-ccm.charite.de/forschung/bildgebung/ag_multisensorische_integration" class="">http://psy-ccm.charite.de/forschung/bildgebung/ag_multisensorische_integration</a></div></span>
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<br class=""><div class=""><div class="">Am 13.11.2015 um 09:41 schrieb Steinmann, Iris:</div><br class="Apple-interchange-newline"><blockquote type="cite" class=""><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; border-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-stroke-width: 0px; font-size: inherit;"><div lang="DE" link="blue" vlink="purple" class=""><div class="WordSection1" style="page: WordSection1; "><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">Hi everybody,<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">I' m using the 'ft_freqstatistics' function to find significant differences between two time-frequency spectra<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">(see the used options down below).<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">While fieldtrip calculates the permutation test it throws the following information:<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">"performing FDR correction for multiple comparisons<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">the returned probabilities are uncorrected, the thresholded mask is corrected"<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">Since I'm using the p-values for the following analysis and not the thresholded mask, I was wondering how I<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">get my p-values corrected for multiple comparison?<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">Does anyone has an idea? Thanks in advance!<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">I used the following options:<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class=""> </span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg = [];<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.channel = 'all';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.latency = [2.3 2.8];<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.avgoverchan = 'yes';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.avgovertime = 'no';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.frequency = [9 14];<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.parameter = 'powspctrm';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.alpha = 0.05;<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.tail = 0;<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.correctm = 'fdr';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.correcttail = 'prob';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.ivar = 1; <o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.statistic = 'ft_statfun_indepsamplesT';<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.method = 'montecarlo'; <o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">cfg.design = design; % defined in at the beginning of the function<o:p class=""></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class="">cfg.numrandomization = 1000;<o:p class=""></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><o:p class=""> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-left: 0cm; margin-bottom: 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span lang="EN-US" class="">stat_TF = ft_freqstatistics(cfg, TF_remove, TF_noremove)<o:p class=""></o:p></span></div></div>_______________________________________________<br class="">fieldtrip mailing list<br class=""><a href="mailto:fieldtrip@donders.ru.nl" style="color: blue; text-decoration: underline; " class="">fieldtrip@donders.ru.nl</a><br class=""><a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" style="color: blue; text-decoration: underline; " class="">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a></div></span></blockquote></div><br class=""></div></div>_______________________________________________<br class="">fieldtrip mailing list<br class=""><a href="mailto:fieldtrip@donders.ru.nl" class="">fieldtrip@donders.ru.nl</a><br class="">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</div></blockquote></div><br class=""></body></html>