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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Dear Rajat,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Both options are fine in principle. The only thing to keep in mind is that you used a non-warped volume (with either a CTF or MNI-grid) when computing
the leadfields. It is crucial that these are computed based on the actual physical proportions/relations of the brain and sensors.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Stan<o:p></o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> fieldtrip-bounces@science.ru.nl [mailto:fieldtrip-bounces@science.ru.nl]
<b>On Behalf Of </b>Tzvetan Popov<br>
<b>Sent:</b> maandag 18 mei 2015 20:02<br>
<b>To:</b> FieldTrip discussion list<br>
<b>Subject:</b> Re: [FieldTrip] Source Reconstruction: MNI or subject space<o:p></o:p></span></p>
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<p class="MsoNormal">Dear Rajat,<o:p></o:p></p>
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<p class="MsoNormal">one option that is widely used by FieldTrip users, I believe, is the computation of source model aligned in MNI space while retaining the individual head model. This FAQ explains how to do this.<o:p></o:p></p>
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<p class="MsoNormal"><a href="http://www.fieldtriptoolbox.org/example/create_single-subject_grids_in_individual_head_space_that_are_all_aligned_in_mni_space">http://www.fieldtriptoolbox.org/example/create_single-subject_grids_in_individual_head_space_that_are_all_aligned_in_mni_space</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">best<o:p></o:p></p>
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<p class="MsoNormal">tzvetan<o:p></o:p></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif"">Dear FieldTrippers,<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif"">When you have to perform source reconstruction, do you do it in MNI space (after warping the T1 image to MNI coordinates?) or is it better to do it in
the individual subject space?<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif"">Thank you.<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif"">Rajat<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif"">Rajat Mani Thomas</span><span style="font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif"">Social Brain Lab</span><span style="font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif"">Netherlands Institute for Neuroscience</span><span style="font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif"">Amsterdam</span><span style="font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Lucida Sans Unicode","sans-serif"">_______________________________________________<br>
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