<div dir="ltr">Hi Nadine, <div> Following up Tzvetan's response , you get the label for every grid by doing this :</div><div><br></div><div><div>clear all;</div><div>clc;</div><div>% read the atlas</div><div>atlas = ft_read_atlas('/home/common/matlab/fieldtrip/template/atlas/aal/ROI_MNI_V4.nii');</div><div> </div><div>load('standard_sourcemodel3d10mm.mat'); % mni template source model</div><div><br></div><div>% and call ft_sourceinterpolate: </div><div>cfg = []; </div><div>cfg.interpmethod = 'nearest'; </div><div>cfg.parameter = 'tissue'; </div><div>sourcemodel2 = ft_sourceinterpolate(cfg, atlas, sourcemodel); </div><div><br></div><div>% replace NAN with 0 ;</div><div>sourcemodel2.tissue(isnan(sourcemodel2.tissue)) =0;</div><div><br></div><div>ids =find(sourcemodel2.tissue); % all interpolate regions</div><div><br></div><div>id =sourcemodel2.tissue(ids); % all interpolate regions index</div><div><br></div><div>ROI =atlas.tissuelabel(id);</div><div><br></div><div>if you want to find Occipital for instance , you just call a few more lines code :</div><div><div><br></div><div>occid =find(strncmpi(ROI,'Occipital',9)); % indice </div><div><br></div><div>OCC =ROI(occid); % label </div></div><div><br></div><div> Hope this helps,</div><div> </div><div> Hatieng</div><div><br></div><div class="gmail_extra"><br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><br>
Message: 6<br>
Date: Wed, 6 May 2015 15:51:59 +0200<br>
From: Nadine <<a href="mailto:nadine.dijkstra92@gmail.com">nadine.dijkstra92@gmail.com</a>><br>
To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
Subject: Re: [FieldTrip] labels per grid point<br>
Message-ID: <<a href="mailto:CFA407AD-66C3-4E7C-8CFE-4630047B8CB5@gmail.com">CFA407AD-66C3-4E7C-8CFE-4630047B8CB5@gmail.com</a>><br>
Content-Type: text/plain; charset=iso-8859-1<br>
<br>
Thanks, the link works fine for me!<br>
I am not sure if this solves the problem however, because it only gives the labels for some points in the plot, while I want to have the label for every individual grid point in a list so that I can see which grid points belong to the same area etc. However, this might be a good place to start. Thanks anyway!<br>
<br>
Best,<br>
Nadine<br>
<br>
On 06 May 2015, at 15:07, J?rn M. Horschig <<a href="mailto:jorn@artinis.com">jorn@artinis.com</a>> wrote:<br>
<br>
> haha ok, I give up, the link still appears to be broken - please copy the<br>
> link together yourself or click on 'Plotting sources of oscillatory<br>
> gamma-band activity' on the navigation tab to the left and look for the<br>
> second exercise in that section.<br>
><br>
><br>
> --<br>
><br>
> J?rn M. Horschig, Software Engineer<br>
> Artinis Medical Systems | <a href="tel:%2B31%20481%20350%20980" value="+31481350980">+31 481 350 980</a><br>
><br>
>> -----Original Message-----<br>
>> From: <a href="mailto:fieldtrip-bounces@science.ru.nl">fieldtrip-bounces@science.ru.nl</a> [mailto:<a href="mailto:fieldtrip-">fieldtrip-</a><br>
>> <a href="mailto:bounces@science.ru.nl">bounces@science.ru.nl</a>] On Behalf Of J?rn M. Horschig<br>
>> Sent: Wednesday, May 6, 2015 2:50 PM<br>
>> To: 'FieldTrip discussion list'<br>
>> Subject: Re: [FieldTrip] labels per grid point<br>
>><br>
>> the correct link is:<br>
>> <a href="http://www.fieldtriptoolbox.org/tutorial/beamformingextended#plotting_s" target="_blank">http://www.fieldtriptoolbox.org/tutorial/beamformingextended#plotting_s</a><br>
>> ource<br>
>> s_of_oscillatory_gamma-band_activity<br>
>> not sure why there was a line break introduced...<br>
>><br>
>><br>
>> --<br>
>><br>
>> J?rn M. Horschig, Software Engineer<br>
>> Artinis Medical Systems | <a href="tel:%2B31%20481%20350%20980" value="+31481350980">+31 481 350 980</a><br>
>><br>
>>> -----Original Message-----<br>
>>> From: <a href="mailto:fieldtrip-bounces@science.ru.nl">fieldtrip-bounces@science.ru.nl</a> [mailto:<a href="mailto:fieldtrip-">fieldtrip-</a><br>
>>> <a href="mailto:bounces@science.ru.nl">bounces@science.ru.nl</a>] On Behalf Of J?rn M. Horschig<br>
>>> Sent: Wednesday, May 6, 2015 2:43 PM<br>
>>> To: 'FieldTrip discussion list'<br>
>>> Subject: Re: [FieldTrip] labels per grid point<br>
>>><br>
>>> Hi Nadine,<br>
>>><br>
>>> does the second exercise in this section help (i.e. defining a lookup<br>
>> atlas for<br>
>>> source plotting):<br>
>>><br>
>> <a href="http://www.fieldtriptoolbox.org/tutorial/beamformingextended#plotting_" target="_blank">http://www.fieldtriptoolbox.org/tutorial/beamformingextended#plotting_</a><br>
>>> s<br>
>>> ource<br>
>>> s_of_oscillatory_gamma-band_activity<br>
>>> ?<br>
>>><br>
>>> Best,<br>
>>> J?rn<br>
>>><br>
>>><br>
>>> --<br>
>>><br>
>>> J?rn M. Horschig, Software Engineer<br>
>>> Artinis Medical Systems | <a href="tel:%2B31%20481%20350%20980" value="+31481350980">+31 481 350 980</a><br>
>>><br>
>>>> -----Original Message-----<br>
>>>> From: <a href="mailto:fieldtrip-bounces@science.ru.nl">fieldtrip-bounces@science.ru.nl</a> [mailto:<a href="mailto:fieldtrip-">fieldtrip-</a><br>
>>>> <a href="mailto:bounces@science.ru.nl">bounces@science.ru.nl</a>] On Behalf Of Nadine<br>
>>>> Sent: Wednesday, May 6, 2015 2:21 PM<br>
>>>> To: <a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a><br>
>>>> Subject: [FieldTrip] labels per grid point<br>
>>>><br>
>>>> Dear Fieldtrip Users,<br>
>>>><br>
>>>> I am trying to get anatomical labels for individual source grid<br>
>>>> points. I<br>
>>> can only<br>
>>>> find how to parcellate the grid points to get an averaged value of<br>
>>>> sources<br>
>>> for<br>
>>>> certain parcellations (e.g. Brodmann areas). But I would like to get<br>
>>>> an anatomical label per grid point, so that I can see which grid<br>
>>>> points<br>
>>> belong to<br>
>>>> which area. Does anybody have any solution for this?<br>
>>>><br>
>>>> Thanks in advance for your help,<br>
>>>> Nadine<br>
>>>><br>
>>>> _______________________________________________<br>
>>>> fieldtrip mailing list<br>
>>>> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
>>>> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
>>><br>
>>><br>
>>> _______________________________________________<br>
>>> fieldtrip mailing list<br>
>>> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
>>> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
>><br>
>><br>
>> _______________________________________________<br>
>> fieldtrip mailing list<br>
>> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
>> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
><br>
><br>
> _______________________________________________<br>
> fieldtrip mailing list<br>
> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
<br>
<br>
<br>
<br>
------------------------------<br>
<br>
Message: 7<br>
Date: Thu, 7 May 2015 09:36:34 +0200<br>
From: Nadine <<a href="mailto:nadine.dijkstra92@gmail.com">nadine.dijkstra92@gmail.com</a>><br>
To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
Subject: Re: [FieldTrip] labels per grid point<br>
Message-ID: <<a href="mailto:306CCF9F-01AC-4036-8B14-C4FFC99AA54E@gmail.com">306CCF9F-01AC-4036-8B14-C4FFC99AA54E@gmail.com</a>><br>
Content-Type: text/plain; charset=us-ascii<br>
<br>
Hi Tzvetan,<br>
<br>
Yes, thank you, this is perfect!<br>
<br>
Best,<br>
Nadine<br>
On 06 May 2015, at 14:37, Tzvetan Popov <<a href="mailto:tzvetan.popov@uni-konstanz.de">tzvetan.popov@uni-konstanz.de</a>> wrote:<br>
<br>
> Hi Nadine,<br>
><br>
> maybe this is what you need?<br>
> <a href="http://www.fieldtriptoolbox.org/faq/how_can_i_map_source_locations_between_two_different_representations" target="_blank">http://www.fieldtriptoolbox.org/faq/how_can_i_map_source_locations_between_two_different_representations</a><br>
><br>
> best<br>
> tzvetan<br>
><br>
>> Dear Fieldtrip Users,<br>
>><br>
>> I am trying to get anatomical labels for individual source grid points. I can only find how to parcellate the grid points to get an averaged value of sources for certain parcellations (e.g. Brodmann areas). But I would like to get an anatomical label per grid point, so that I can see which grid points belong to which area. Does anybody have any solution for this?<br>
>><br>
>> Thanks in advance for your help,<br>
>> Nadine<br>
>><br>
>> _______________________________________________<br>
>> fieldtrip mailing list<br>
>> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
>> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
><br>
><br>
> _______________________________________________<br>
> fieldtrip mailing list<br>
> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
<br>
<br>
<br>
<br>
------------------------------<br>
<br>
Message: 8<br>
Date: Thu, 7 May 2015 10:21:19 +0200<br>
From: H?l?ne Guiraud <<a href="mailto:guiraudh@gmail.com">guiraudh@gmail.com</a>><br>
To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
Subject: Re: [FieldTrip] re template for children<br>
Message-ID:<br>
<<a href="mailto:CAJ16KS8BwyAttHC2E23tsdisvjE%2BY_T5NAjpMm4F8--0H6HN8g@mail.gmail.com">CAJ16KS8BwyAttHC2E23tsdisvjE+Y_T5NAjpMm4F8--0H6HN8g@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi Till and John,<br>
<br>
Thank you, this is perfect!<br>
<br>
Best regards,<br>
H?l?ne<br>
<br>
2015-04-30 14:12 GMT+02:00 RICHARDS, JOHN <<a href="mailto:RICHARDS@mailbox.sc.edu">RICHARDS@mailbox.sc.edu</a>>:<br>
<br>
> We have a template for children?actually have for infants from 2 weeks<br>
> through adults at 89 years. We also have average electrode positions for<br>
> EGI sensor nets (GSN128, HGSN128) and the 10-10 system; and segmented<br>
> priors, stereotaxic atlases, and segmented heads (BEM, FEM). I also have<br>
> been using this recently with FT for infants and child/adolescent/adult<br>
> ages.<br>
><br>
> WWW site: <a href="http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/" target="_blank">http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/</a><br>
> Fro www site: This is a database of average MRIs and associated MRI<br>
> volumes for developmental MRI work. It consists of average MRI templates,<br>
> segmented partial volume estimate volumes for GM, WM, T2W-derived CSF<br>
> (Description<br>
> <<a href="http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/Description.html" target="_blank">http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/Description.html</a><br>
> ><br>
> ). The database is separated into head-based and brain-based averages. The<br>
> data are separated by ages in months, years, 6-month, or 5-year intervals<br>
> (Ages and Templates<br>
> <<br>
> <a href="http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/agestemplates.htm" target="_blank">http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/agestemplates.htm</a><br>
> l>). The templates are grouped into first year (2 weeks through 12<br>
> months), early childhood (15 months through 4 years), childhood (4 years<br>
> through 10 years), adolescence (10.5 years through 17.5 years) and adults<br>
> (18 years through 89 years).<br>
> Tools for cortical source analysis of EEG and ERP are provided. These<br>
> tools are based on the average MRI templates, segmenting, and atlases.<br>
><br>
> Also see my www site, <a href="http://jerlab.psych.sc.edu" target="_blank">jerlab.psych.sc.edu</a> for publications describing<br>
> this. We have a recent chapter that has a good description of the issues<br>
> behind the database (with Wanze Xie). We have a paper accepted at<br>
> Neuroimage for their upcoming ?Data Sharing? issue (with Carmen Sanchez,<br>
> Michelle Phillips-Meek, and Wanze Xie).<br>
><br>
> John<br>
><br>
><br>
> ***********************************************<br>
> John E. Richards Carolina Distinguished Professor<br>
> Department of Psychology<br>
> University of South Carolina<br>
> Columbia, SC 29208<br>
> Dept Phone: 803 777 2079<br>
> Fax: 803 777 9558<br>
> Email: <a href="mailto:richards-john@sc.edu">richards-john@sc.edu</a><br>
> HTTP: <a href="http://jerlab.psych.sc.edu" target="_blank">jerlab.psych.sc.edu</a><br>
> ***********************************************<br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
> On 4/30/15, 6:00 AM, "<a href="mailto:fieldtrip-request@science.ru.nl">fieldtrip-request@science.ru.nl</a>"<br>
> <<a href="mailto:fieldtrip-request@science.ru.nl">fieldtrip-request@science.ru.nl</a>> wrote:<br>
><br>
> >Send fieldtrip mailing list submissions to<br>
> > <a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a><br>
> ><br>
> >To subscribe or unsubscribe via the World Wide Web, visit<br>
> > <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
> >or, via email, send a message with subject or body 'help' to<br>
> > <a href="mailto:fieldtrip-request@science.ru.nl">fieldtrip-request@science.ru.nl</a><br>
> ><br>
> >You can reach the person managing the list at<br>
> > <a href="mailto:fieldtrip-owner@science.ru.nl">fieldtrip-owner@science.ru.nl</a><br>
> ><br>
> >When replying, please edit your Subject line so it is more specific<br>
> >than "Re: Contents of fieldtrip digest..."<br>
> ><br>
> ><br>
> >Today's Topics:<br>
> ><br>
> > 1. Search for a template children. (H?l?ne Guiraud)<br>
> > 2. Re: Search for a template children. (Till Schneider)<br>
> > 3. ICBM 152 templates in FT (Keyvan Mahjoory)<br>
> ><br>
> ><br>
> >----------------------------------------------------------------------<br>
> ><br>
> >Message: 1<br>
> >Date: Wed, 29 Apr 2015 14:45:56 +0200<br>
> >From: H?l?ne Guiraud <<a href="mailto:guiraudh@gmail.com">guiraudh@gmail.com</a>><br>
> >To: <a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a><br>
> >Subject: [FieldTrip] Search for a template children.<br>
> >Message-ID:<br>
> > <<br>
> <a href="mailto:CAJ16KS_S7ednTeE2MgaLasRaWD4GK%2B0ChX0S%2BnYZzU_-ypdh4w@mail.gmail.com">CAJ16KS_S7ednTeE2MgaLasRaWD4GK+0ChX0S+nYZzU_-ypdh4w@mail.gmail.com</a>><br>
> >Content-Type: text/plain; charset="utf-8"<br>
> ><br>
> >Dear community,<br>
> ><br>
> >My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France) on<br>
> >speech perception in children using MEG.<br>
> >The children involved in the study don't pass MRI. We want to achieve<br>
> >source reconstruction from a template. However I can't find a template<br>
> >corresponding to the anatomy of a child (8-12 years).<br>
> >Can someone tell me if there are template children and where I can find<br>
> >them?<br>
> ><br>
> >Best,<br>
> ><br>
> >H?l?ne Guiraud<br>
> >-------------- next part --------------<br>
> >An HTML attachment was scrubbed...<br>
> >URL:<br>
> ><<br>
> <a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150429/03e" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150429/03e</a><br>
> >9b53e/attachment-0001.html><br>
> ><br>
> >------------------------------<br>
> ><br>
> >Message: 2<br>
> >Date: Wed, 29 Apr 2015 15:53:13 +0200<br>
> >From: Till Schneider <<a href="mailto:t.schneider@uke.uni-hamburg.de">t.schneider@uke.uni-hamburg.de</a>><br>
> >To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
> >Subject: Re: [FieldTrip] Search for a template children.<br>
> >Message-ID: <<a href="mailto:5540E249.3000200@uke.uni-hamburg.de">5540E249.3000200@uke.uni-hamburg.de</a>><br>
> >Content-Type: text/plain; charset="windows-1252"; Format="flowed"<br>
> ><br>
> >Dear Helene,<br>
> ><br>
> >McGill University provides MNI brains for different age groups between<br>
> >4.5y to 18y.<br>
> ><a href="http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1" target="_blank">http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1</a><br>
> >You will probably find the template brain you are searching for in this<br>
> >database.<br>
> ><br>
> >Best regards,<br>
> >Till<br>
> ><br>
> >--<br>
> ><br>
> >Till Schneider, PhD<br>
> ><br>
> >Cognitive and Clinical Neurophysiology Group<br>
> >Dept. of Neurophysiology and Pathophysiology<br>
> >University Medical Center Hamburg-Eppendorf<br>
> >Martinistr. 52<br>
> >20246 Hamburg<br>
> >Germany<br>
> ><br>
> >phone <a href="tel:%2B49-40-7410-53188" value="+4940741053188">+49-40-7410-53188</a><br>
> >fax <a href="tel:%2B49-40-7410-57126" value="+4940741057126">+49-40-7410-57126</a><br>
> ><a href="http://www.uke.de/neurophysiologie" target="_blank">www.uke.de/neurophysiologie</a><br>
> ><br>
> ><br>
> ><br>
> >Am 29.04.15 um 14:45 schrieb H?l?ne Guiraud:<br>
> >> Dear community,<br>
> >><br>
> >> My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France)<br>
> >> on speech perception in children using MEG.<br>
> >> The children involved in the study don't pass MRI. We want to achieve<br>
> >> source reconstruction from a template. However I can't find a template<br>
> >> corresponding to the anatomy of a child (8-12 years).<br>
> >> Can someone tell me if there are template children and where I can<br>
> >> find them?<br>
> >><br>
> >> Best,<br>
> >><br>
> >> H?l?ne Guiraud<br>
> >><br>
> >><br>
> >> _______________________________________________<br>
> >> fieldtrip mailing list<br>
> >> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
> >> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
> ><br>
> ><br>
> >--<br>
> ><br>
> >_____________________________________________________________________<br>
> ><br>
> >Universit?tsklinikum Hamburg-Eppendorf; K?rperschaft des ?ffentlichen<br>
> >Rechts; Gerichtsstand: Hamburg | <a href="http://www.uke.de" target="_blank">www.uke.de</a><br>
> >Vorstandsmitglieder: Prof. Dr. Burkhard G?ke (Vorsitzender), Prof. Dr.<br>
> >Dr. Uwe Koch-Gromus, Joachim Pr?l?, Rainer Schoppik<br>
> >_____________________________________________________________________<br>
> ><br>
> >SAVE PAPER - THINK BEFORE PRINTING<br>
> >-------------- next part --------------<br>
> >An HTML attachment was scrubbed...<br>
> >URL:<br>
> ><<br>
> <a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150429/c4e" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150429/c4e</a><br>
> >44937/attachment-0001.html><br>
> ><br>
> >------------------------------<br>
> ><br>
> >Message: 3<br>
> >Date: Wed, 29 Apr 2015 16:25:35 +0200<br>
> >From: Keyvan Mahjoory <<a href="mailto:mahjoory86@gmail.com">mahjoory86@gmail.com</a>><br>
> >To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
> >Subject: [FieldTrip] ICBM 152 templates in FT<br>
> >Message-ID:<br>
> > <CA+qK++u51A-Z9XRP+MfckZJtG7d47oLtALbpEo=<br>
> <a href="mailto:UJp6-%2B4%2B7fA@mail.gmail.com">UJp6-+4+7fA@mail.gmail.com</a>><br>
> >Content-Type: text/plain; charset="iso-8859-1"<br>
> ><br>
> >Dear Fieldtrip Users,<br>
> ><br>
> >I perform source analysis in Fieldtrip with a template head model (<br>
> >standard_bem <<a href="http://www.fieldtriptoolbox.org/template/headmodel" target="_blank">http://www.fieldtriptoolbox.org/template/headmodel</a>>) and a<br>
> >template source model (cortex_5124.surf.gii<br>
> ><<a href="http://www.fieldtriptoolbox.org/template/sourcemodel" target="_blank">http://www.fieldtriptoolbox.org/template/sourcemodel</a>>) to constarin<br>
> >estimated sources on cortex. These templates are based on Colin27, But I<br>
> >prefere to use the template ICBM152 instead.<br>
> >Does FT include ICBM template? I mean templates for both head model and<br>
> >cortical surfe.<br>
> ><br>
> >Many Thanks in advance,<br>
> >Keyvan<br>
> >-------------- next part --------------<br>
> >An HTML attachment was scrubbed...<br>
> >URL:<br>
> ><<br>
> <a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150429/992" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150429/992</a><br>
> >9daf3/attachment-0001.html><br>
> ><br>
> >------------------------------<br>
> ><br>
> >_______________________________________________<br>
> >fieldtrip mailing list<br>
> ><a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
> ><a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
> ><br>
> >End of fieldtrip Digest, Vol 53, Issue 23<br>
> >*****************************************<br>
><br>
><br>
> _______________________________________________<br>
> fieldtrip mailing list<br>
> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
><br>
<br>
<br>
<br>
--<br>
H?l?ne Guiraud<br>
Doctorante<br>
Universit? Lyon 2<br>
Laboratoire Dynamique Du Langage<br>
CNRS, UMR 5596<br>
Tel : <a href="tel:04%2072%2072%2065%2034" value="+31472726534">04 72 72 65 34</a><br>
<a href="mailto:guiraudh@gmail.com">guiraudh@gmail.com</a> <<a href="mailto:Helene.Guiraud@univ-lyon2.fr">Helene.Guiraud@univ-lyon2.fr</a>><br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/0bd0dea8/attachment-0001.html" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/0bd0dea8/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Message: 9<br>
Date: Thu, 7 May 2015 08:29:39 +0000<br>
From: "Sander, Myriam" <<a href="mailto:sander@mpib-berlin.mpg.de">sander@mpib-berlin.mpg.de</a>><br>
To: FieldTrip discussion list ?[<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>]?<br>
<<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
Subject: [FieldTrip] Vacant Predoctoral Position in Lifespan<br>
Psychology at the MPI for Human Development in Berlin, Germany<br>
Message-ID:<br>
<<a href="mailto:D12CFACF574CEA4498D72B949FF5631C9B20628E@MaxMail04.mpib-berlin.mpg.de">D12CFACF574CEA4498D72B949FF5631C9B20628E@MaxMail04.mpib-berlin.mpg.de</a>><br>
<br>
Content-Type: text/plain; charset="cp1256"<br>
<br>
*********************************************************<br>
<br>
PREDOCTORAL POSITION: CENTER FOR LIFESPAN PSYCHOLOGY, MPI BERLIN<br>
<br>
The new MINERVA research group headed by Dr. Myriam Sander at the Max Planck Institute for Human Development, Center for Lifespan Psychology (Director: Prof. Dr. Ulman Lindenberger), is seeking applications for a<br>
<br>
PREDOCTORAL POSITION<br>
<br>
The doctoral contract will last for 3 years. The position is available from October 1, 2015 or later.<br>
<br>
Job Description: Future research of the new MINERVA research group (PI: Dr. Myriam Sander) will use a multi-modal imaging approach (EEG with a focus on oscillatory measures in combination with structural and functional MRI) to uncover lifespan differences in the interplay between sensory (visual and auditory) and cognitive abilities influencing memory performance. The MINERVA research group is part of the project ?Cognitive and Neural Dynamics of Memory Across the Lifespan (CONMEM)? which investigates lifespan changes in the interplay between associative and strategic components of memory functioning on neural and cognitive levels, with a focus on working and episodic memory (see Sander, et al., Neurosci. Biobehav. Rev., 2012; Shing, et al., Neurosci. Biobehav. Rev., 2010). The successful predoctoral fellow will plan and conduct empirical studies in this domain, analyze the behavioral, EEG, and MRI data, and prepare scientific manuscripts for publication.<br>
<br>
For further information, please contact: Dr. Myriam Sander (<a href="mailto:sander@mpib-berlin.mpg.de">sander@mpib-berlin.mpg.de</a>)<br>
<br>
Requirements: A successful applicant needs to hold (or expect by summer 2015) a diploma/master degree in psychology, cognitive neuroscience, or related fields. Applicants should have experience with conducting experimental research, knowledge in neuroimaging methods (EEG and/or MRI), and a solid background in at least one programming language (preferably Matlab or R). In addition, the ability to work independently as well as a high proficiency of the English language is required. Experience with age-comparative studies is an advantage.<br>
<br>
The Max Planck Society is interested in increasing the number of women on its scientific staff. We strongly encourage applications from women and members of minority groups. In addition, the Max Planck Society is committed to employing more handicapped individuals and encourages them to apply.<br>
<br>
To apply, please send (as ONE FILE and via email only) a statement of research interests, a CV, a copy of relevant certificates, (p)reprints of publications, and a list of two references to Dr. Myriam Sander, MPI for Human Development, Lentzeallee 94, 14195 Berlin (<a href="mailto:sander@mpib-berlin.mpg.de">sander@mpib-berlin.mpg.de</a>) preferably by June 30th, 2015. Later applications will be considered until the position is filled.<br>
<br>
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *<br>
<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/0579250d/attachment-0001.html" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/0579250d/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Message: 10<br>
Date: Thu, 7 May 2015 11:11:54 +0200<br>
From: "Hamza Fawzi Altakroury (Alumni)" <<a href="mailto:hamzaf@sabanciuniv.edu">hamzaf@sabanciuniv.edu</a>><br>
To: FieldTrip discussion list <<a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a>><br>
Subject: [FieldTrip] Vgrid<br>
Message-ID:<br>
<<a href="mailto:CADB5qVBgnCciEmuwJ8ZR3MPRrEuHeWdysTQWek9%2BaTabP6-GMg@mail.gmail.com">CADB5qVBgnCciEmuwJ8ZR3MPRrEuHeWdysTQWek9+aTabP6-GMg@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hello,<br>
<br>
I got the following error when I run these lines: (found in<br>
<a href="http://www.fieldtriptoolbox.org/development/simbio" target="_blank">http://www.fieldtriptoolbox.org/development/simbio</a>)<br>
<br>
cfg = [];<br>
cfg.shift = 0.3;<br>
cfg.method = 'hexahedral';<br>
mesh = ft_prepare_mesh(cfg,segmentedmri);<br>
<br>
Error using vgrid (line 16)<br>
the vgrid executable is not available for your platform, it was expected to<br>
be<br>
located at<br>
***\external\vgrid\bin\pcwin64\vgrid.exe<br>
<br>
I don't have a folder called pcwin64! I have only glnx86 (empty folder)<br>
glnxa64 and maci64 in ***\external\vgrid\bin\<br>
<br>
I also downloaded a newer version of fieldtrip, but I did not find it!<br>
<br>
>From where I can get vgrid.exe?<br>
<br>
Thank you<br>
<br>
<br>
--<br>
Hamza Fawzi Altakroury<br>
Graduate student - MA<br>
Faculty of Engineering and Natural Sciences<br>
Sabanc? University<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/793650e7/attachment-0001.html" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/793650e7/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Message: 11<br>
Date: Thu, 07 May 2015 11:40:17 +0200<br>
From: Johannes Vorwerk <<a href="mailto:j.vorw01@gmail.com">j.vorw01@gmail.com</a>><br>
To: <a href="mailto:fieldtrip@science.ru.nl">fieldtrip@science.ru.nl</a><br>
Subject: Re: [FieldTrip] Vgrid<br>
Message-ID: <1430991617.11932.23.camel@biomag43><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi,<br>
<br>
vgrid should no longer be needed in recent fieldtrip-versions. It was<br>
replaced by a fully matlab-based function (prepare_mesh_hexahedral),<br>
that should now also work under windows. A vgrid.exe never existed, it<br>
was only available for mac and linux. Did you try updating your<br>
fieldtrip-version to a recent release?<br>
<br>
Best,<br>
Johannes<br>
<br>
Am Donnerstag, den 07.05.2015, 11:11 +0200 schrieb Hamza Fawzi<br>
Altakroury (Alumni):<br>
> Hello,<br>
><br>
><br>
><br>
> I got the following error when I run these lines: (found in<br>
> <a href="http://www.fieldtriptoolbox.org/development/simbio" target="_blank">http://www.fieldtriptoolbox.org/development/simbio</a>)<br>
><br>
> cfg = [];<br>
> cfg.shift = 0.3;<br>
> cfg.method = 'hexahedral';<br>
> mesh = ft_prepare_mesh(cfg,segmentedmri);<br>
><br>
><br>
><br>
> Error using vgrid (line 16)<br>
> the vgrid executable is not available for your platform, it was<br>
> expected to be<br>
> located at<br>
> ***\external\vgrid\bin\pcwin64\vgrid.exe<br>
><br>
><br>
><br>
> I don't have a folder called pcwin64! I have only glnx86 (empty<br>
> folder) glnxa64 and maci64 in ***\external\vgrid\bin\<br>
><br>
><br>
><br>
> I also downloaded a newer version of fieldtrip, but I did not find it!<br>
><br>
><br>
> From where I can get vgrid.exe?<br>
><br>
><br>
> Thank you<br>
><br>
><br>
><br>
> --<br>
><br>
> Hamza Fawzi Altakroury<br>
> Graduate student - MA<br>
> Faculty of Engineering and Natural Sciences<br>
> Sabanc? University<br>
><br>
> _______________________________________________<br>
> fieldtrip mailing list<br>
> <a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
> <a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
<br>
<br>
--<br>
Dipl.-Math. Johannes Vorwerk<br>
e-mail: <a href="mailto:j.vorwerk@uni-muenster.de">j.vorwerk@uni-muenster.de</a><br>
<br>
Workgroup Methods in Bioelectromagnetism, PD. Dr. Carsten Wolters<br>
Institute for Biomagnetism and Biosignalanalysis, University of Muenster<br>
www: <a href="http://campus.uni-muenster.de/index.php?id=919&L=1" target="_blank">http://campus.uni-muenster.de/index.php?id=919&L=1</a><br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/6c43fe26/attachment-0001.html" target="_blank">http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20150507/6c43fe26/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
_______________________________________________<br>
fieldtrip mailing list<br>
<a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>
<a href="http://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">http://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><br>
<br>
End of fieldtrip Digest, Vol 54, Issue 5<br>
****************************************<br>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div dir="ltr"><div><div>Haiteng Jiang </div><div>PhD candidate</div><div>Donders Institute for Brain, Cognition and Behaviour</div><div>Neuronal Oscillations Group </div><div>Computational Cognitive Neuroscience Lab</div></div><div><font face="arial, helvetica, sans-serif"><a href="https://sites.google.com/site/haitengjiang/" target="_blank">https://sites.google.com/site/haitengjiang/</a></font></div></div></div>
</div></div></div>