<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Sara,<div><br></div><div><br><div><div><blockquote type="cite"><div>I have downloaded the 20140114 version of Fieldtrip and tried again to<br>use the command ft_volumerealign in the following way (as suggested in<br>the tutorials)<br><br>mri = ft_read_mri('*....\Subject01.mri');<br>cfg=[];<br>cfg.method = 'interactive';<br>mri_realigned = ft_volumerealign(cfg, mri);<br><br>Then I identify it by pressing either n/l/r for fiducials and finally<br>I press q in order to quit. But no results appear on my screen.<br>Any suggestion to solve this?<br></div></blockquote><div><br></div>I don't understand what you mean by 'no results appear on my screen'. Does this mean that mri_realigned is not created?</div><div><br><blockquote type="cite"><div>I have tried to use also the following command<br> [mri] = ft_convert_coordsys(mri, 'itab');<br><br>but I get the error message<br> [mri] = ft_convert_coordsys(mri, 'itab');<br>??? Error using ==> ft_convert_coordsys at 102<br>conversion from ctf to itab is not yet supported</div></blockquote><blockquote type="cite"><div><br>In order to better understand the problem, I have tried to perform a different transformation with the code<br><br>[mri] = ft_convert_coordsys(mri, 'spm', 2)<br>and I get the following message<br><br>Converting the coordinate system from ctf to spm<br>??? Undefined function or method 'spm' for input arguments of type 'char'.<br></div></blockquote><div><br></div><div>You have to have spm on your path in order to get this. try ft_hastoolbox('spm',1) and try again.</div><br><blockquote type="cite"><div><br>Error in ==> align_ctf2spm at 121<br> switch spm('ver')<br><br>Error in ==> ft_convert_coordsys at 90<br> obj = align_ctf2spm(obj, opt);<br><br>Finally I tried to use the function align_itab2spm in the following way<br>mri = align_itab2spm(mri, 2)<br>but I get the error message<br><br>??? Undefined function or method 'spm' for input arguments of type 'char'.<br><br>Error in ==> align_itab2spm at 108<br> switch spm('ver')<br><br></div></blockquote><div><br></div><div><br></div><div>See above.</div><div><br></div><div>Best,</div><div>Jan-Mathijs</div><div><br></div><br><blockquote type="cite"><div>Do you have any idea or suggestion to solve this problem?<br><br>Thanks in advance for any advice,<br>Sara<br><br>-------------------------<br> Dott.ssa Sara Rombetto<br> Istituto di Cibernetica<br> "E. Caianiello"<br> Via Campi Flegrei, 34<br> 80078 Pozzuoli (NA)<br> Italy<br> mob +39 3401689815<br> tel +39 0818675361<br> fax +39 0818675128<br>--------------------------<br>"I disapprove of what you say, but I will defend to the death your right to say<br>it." [Evelyn Beatrice Hall, The Friends Of Voltaire]<br><br>----------------------------------------------------------------<br>This message was sent using IMP, the Internet Messaging Program.<br><br><br><br>_______________________________________________<br>fieldtrip mailing list<br><a href="mailto:fieldtrip@donders.ru.nl">fieldtrip@donders.ru.nl</a><br>http://mailman.science.ru.nl/mailman/listinfo/fieldtrip<br></div></blockquote></div><br><div>
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font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Jan-Mathijs Schoffelen, MD PhD </div><div><br></div><div>Donders Institute for Brain, Cognition and Behaviour, <br>Centre for Cognitive Neuroimaging,<br>Radboud University Nijmegen, The Netherlands</div><div><br></div><div>Max Planck Institute for Psycholinguistics,</div><div>Nijmegen, The Netherlands</div><div><br></div><div><a href="mailto:J.Schoffelen@donders.ru.nl">J.Schoffelen@donders.ru.nl</a></div><div>Telephone: +31-24-3614793</div><div><br></div><div><a href="http://www.hettaligebrein.nl">http://www.hettaligebrein.nl</a></div></div></span></div></span></div></span></div></span></div></span></div></span></div></span></div></span></span>
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