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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222;background:white">Hi Nicola and Jan-Mathijs,</span><span style="font-size:12.0pt;font-family:"Times New Roman","serif""><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222">A simple solution can also be to save the points (the fiducials) that you have collected in MRIlab in 'voxel'. After we do the realignment with the polhemus data,
we delete all points. We then create points at the final fiducial locations and export these. In this ‘Export points’ window you can select if you want to save them in head or voxel coordinates. The resulting .txt files can be read in matlab, and you can use
them to realign the MRI in fieldtrip.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222">Good luck!<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222">Thanks for the info as well, Jan-Mathijs! I didn't know about the two step solution in Fieldtrip, but will certainly give it a try! <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Arial","sans-serif";color:#222222">Groetjes Hanneke<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:9.0pt">__________________________________________<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Hanneke van Dijk, PhD<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="DE" style="font-size:9.0pt"><a href="http://www.uniklinik-duesseldorf.de/deutsch/unternehmen/institute/KlinNeurowiss/Team/HannekevanDijk/page.html"><span lang="EN-US" style="color:blue">http://www.uniklinik-duesseldorf.de/deutsch/unternehmen/institute/KlinNeurowiss/Team/HannekevanDijk/page.html</span></a></span><span style="font-size:9.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Institute for Clinical Neuroscience,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Heinrich Heine Universit</span><span lang="DE" style="font-size:9.0pt">ä</span><span style="font-size:9.0pt">t D</span><span lang="DE" style="font-size:9.0pt">ü</span><span style="font-size:9.0pt">sseldorf,
Germany<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt"><a href="mailto:Hanneke.vanDijk@med.uni-duesseldorf.de">Hanneke.vanDijk@med.uni-duesseldorf.de</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Tel. +49 (0) 211 81 13074 <o:p>
</o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt">__________________________________________
<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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