<div>Hello Eelke,</div>
<div> </div>
<div>Thank you very much for your answers. I will file this bug in Bugzilla tracking system.</div>
<div> </div>
<div>I also found that there are some functions which are used in the ft_spike* function are not in the Fieldtrip. One is <em>specest_nanfft.m</em> which is used in ft_spiketriggeredspectrum.m and another is <em>ft_write_spike</em> which is used in ft_spikedetection. We could not find the two functions in Fieldtrip to run these main functions about spike analysis.</div>
<div> </div>
<div>Whether it has been changed names or put somewhere else? Would you please give me some idea about that?</div>
<div>Thanks again!</div>
<div> </div>
<div>Best Regards</div>
<div> </div>
<div>Jing</div>
<div><br><br> </div>
<div class="gmail_quote">2012/5/21 Eelke Spaak <span dir="ltr"><<a href="mailto:eelke.spaak@donders.ru.nl" target="_blank">eelke.spaak@donders.ru.nl</a>></span><br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">Dear Jing Wang,<br><br>This is a bug in the functions you mention. ft_checkconfig should be<br>called like this:<br>
<br>cfg = ft_checkconfig(cfg, 'forbidden', {'inputfile', 'outputfile'});<br><br>so with the forbidden options grouped in a cell array, rather than as<br>it was done in the code snippet you posted. There also seem to be a<br>
few other minor bugs in the ft_getopt/checkopt calls.<br><br>Could you file a bug on this on our Bugzilla tracking system?<br><a href="http://bugzilla.fcdonders.nl/" target="_blank">http://bugzilla.fcdonders.nl/</a> Thank you for reporting this!<br>
<br>Best,<br>Eelke<br>
<div>
<div><br>On 21 May 2012 13:44, Jing Wang <<a href="mailto:wljj09@gmail.com" target="_blank">wljj09@gmail.com</a>> wrote:<br>> Dear Fieldtrip developers and users,<br>><br>> I have found same error when I using ft_spiketriggeredaverage and<br>
> ft_spiketriggeredspectrum.m.<br>> After I run the following script, an error appeared at line 51<br>> cfg=ft_checkconfig. This error also is same when I run<br>> ft_spiketriggeredspectrum.m. But after I use comment to silent a part of<br>
> these functions. it could work well. It is same for both the latese and<br>> 20120420 version of Fieldtrip. I donnot know whether it is a bug or<br>> something wrong with my data? Would anybody who knows can help me?<br>
> That will be really appreciated! Thanks in advance!<br>> Jing<br>><br>> I have append spike and LFP into data. The folloing is the script and error<br>> information.<br>> cfg=[];<br>> cfg.timwin = [-0.01 0.01];<br>
> cfg.spikechannel =data.label{1};<br>> cfg.channel = data.label{2};<br>> cfg.keeptrials ='yes';<br>> cfg.feedback='yes';<br>> [timelock] = ft_spiketriggeredaverage(cfg, data);<br>><br>> Error using ft_getopt<br>
> the first input should contain key-value pairs<br>> Error in ft_checkconfig (line 83)<br>> renamed = ft_getopt(varargin, 'renamed');<br>> Error in ft_spiketriggeredaverage (line 51)<br>> cfg = ft_checkconfig(cfg, 'forbidden', 'inputfile', ...<br>
><br>> For ft_spikertriggerespectrum, I silent the line like this, the script can<br>> work well.<br>> % cfg = ft_checkconfig(cfg, 'forbidden', 'inputfile', ...<br>> % 'outputfile'); % see<br>
> <a href="http://bugzilla.fcdonders.nl/show_bug.cgi?id=1056" target="_blank">http://bugzilla.fcdonders.nl/show_bug.cgi?id=1056</a><br>><br>> For ft_spiketriggeredaverage, the script can work when I silent these part.<br>
> it can work well.<br>> % cfg.timwin = ft_getopt(cfg, 'timwin',[-0.1 0.1]);<br>> % cfg.spikechannel = ft_getopt(cfg,'spikechannel', []);<br>> % cfg.channel = ft_getopt(cfg,'channel', 'all');<br>
> % cfg.keeptrials = ft_checkopt(cfg,'keeptrials', 'char', {'yes', 'no'});<br>> % cfg.feedback = ft_checkopt(cfg,'feedback', 'yes');<br>><br></div></div>> _______________________________________________<br>
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</blockquote></div><br>