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<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Please always send replies to the list and
not only to the person that responded, so everyone can benefit and answer.<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>

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<p class=MsoNormal><b><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma;font-weight:bold'>From:</span></font></b><font size=2
face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'> Amr Ayoub
[mailto:amrgermany@yahoo.com] <br>
<b><span style='font-weight:bold'>Sent:</span></b> Monday, August 03, 2009 4:13
PM<br>
<b><span style='font-weight:bold'>To:</span></b> ingrid.nieuwenhuis@donders.ru.nl<br>
<b><span style='font-weight:bold'>Subject:</span></b> Re: [FIELDTRIP]
Significance plot of TFR-Morlet</span></font><o:p></o:p></p>

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<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Dear Ingrid,<br>
<br>
Thanks for your fast reply.<br>
<br>
Maybe I should rephrase my question. <br>
I have used singleplotTFR with <br>
cfg.basleine = [-1.8 1.8]<br>
cfg.basleinetype='relative'<br>
cfg.xlim=[-.5 .5]<br>
cfg.ylim=[10 106]<br>
cfg.zlim=[-1.8 1.8]<br>
I see red spots corresponding to high gamma activity but I don't know if they
are significant or not. These red spots are scattered on different channels,
time points and frequencies. <br>
<br>
Do you think taking 200 surrogate time points of the power spectrum assuming a
normal distribution of the surrogate power values, a significance threshold can
be calculated by two tailed test?<br>
<br>
</span></font><font size=2 face=Arial><span style='font-size:10.0pt;font-family:
Arial'><o:p></o:p></span></font></p>

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<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>threshold = norminv([(1-alpha/2)],M,SD), where alpha=0.01, M=mean and
SD = standard deviation<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Then subtract this threshold from the powerspctrm and last
but not least use singleplotTFR?<br>
<br>
Thanks for your help.<br>
<br>
Best regards,<br>
Amr<o:p></o:p></span></font></p>

</div>

<div>

<p class=MsoNormal style='margin-bottom:12.0pt'><font size=2 face=Arial><span
style='font-size:10.0pt;font-family:Arial'><br>
Ps. To double check, is normalization applied to each frequency band in the
singleplotTFR?<br>
Note: cf.maskparameter is a new option in singleplotTFR.<o:p></o:p></span></font></p>

<div>

<div class=MsoNormal align=center style='text-align:center'><font size=2
face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'>

<hr size=1 width="100%" align=center>

</span></font></div>

<p class=MsoNormal style='margin-bottom:12.0pt'><b><font size=2 face=Tahoma><span
style='font-size:10.0pt;font-family:Tahoma;font-weight:bold'>From:</span></font></b><font
size=2 face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'> Ingrid
Nieuwenhuis <ingrid.nieuwenhuis@DONDERS.RU.NL><br>
<b><span style='font-weight:bold'>To:</span></b> FIELDTRIP@NIC.SURFNET.NL<br>
<b><span style='font-weight:bold'>Sent:</span></b> Monday, August 3, 2009
2:09:41 PM<br>
<b><span style='font-weight:bold'>Subject:</span></b> Re: [FIELDTRIP] Significance
plot of TFR-Morlet</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Dear Amr,</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>From your question I can not make up what
you already tried and where you run into problems, so I’ll give you some basic
handles to info at the FieldTrip wiki (and also  see the help of the
functions below).</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>A nice overview on plotting functions in
to be found in the plotting Tutorial: <a
href="http://fieldtrip.fcdonders.nl/tutorial/plotting" target="_blank">http://fieldtrip.fcdonders.nl/tutorial/plotting</a>
</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Did you try singleplotTFR, multiplotTFR or
topoplotTFR with cfg.maskparameter options? There is also clusterplot but see
the mailinglist posts that have been about that recently for limitations of
clusterplot (<a
href="https://listserv.surfnet.nl/scripts/wa.cgi?A2=ind0907&L=fieldtrip&T=0&F=&S=&P=4160"
target="_blank">https://listserv.surfnet.nl/scripts/wa.cgi?A2=ind0907&L=fieldtrip&T=0&F=&S=&P=4160</a>)</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Hope this helps you further,</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Ingrid</span></font><o:p></o:p></p>

<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><o:p></o:p></p>

<div style='border:none;border-left:solid windowtext 1.5pt;padding:0cm 0cm 0cm 4.0pt;
border-color:-moz-use-text-color -moz-use-text-color -moz-use-text-color blue'>

<div>

<div class=MsoNormal align=center style='text-align:center'><font size=3
face="Times New Roman"><span style='font-size:12.0pt'>

<hr size=2 width="100%" align=center tabindex=-1>

</span></font></div>

<p class=MsoNormal><b><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma;font-weight:bold'>From:</span></font></b><font size=2
face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'> <st1:PersonName
w:st="on">FieldTrip discussion list</st1:PersonName>
[mailto:FIELDTRIP@NIC.SURFNET.NL] <b><span style='font-weight:bold'>On Behalf
Of </span></b>Amr Ayoub<br>
<b><span style='font-weight:bold'>Sent:</span></b> Monday, August 03, 2009 1:33
PM<br>
<b><span style='font-weight:bold'>To:</span></b> FIELDTRIP@NIC.SURFNET.NL<br>
<b><span style='font-weight:bold'>Subject:</span></b> [FIELDTRIP] Significance
plot of TFR-Morlet</span></font><o:p></o:p></p>

</div>

<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> <o:p></o:p></span></font></p>

<div>

<div>

<p class=MsoNormal style='margin-bottom:12.0pt'><font size=2 face=Arial><span
style='font-size:10.0pt;font-family:Arial'>Hi everyone, <br>
<br>
How do I produce a significance plot of the "Time Frequency
Representations of power calculated using Morlet wavelets"?<br>
<br>
Best regards,<br>
Amr Ayoub</span></font><o:p></o:p></p>

</div>

</div>

<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> <o:p></o:p></span></font></p>

</div>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'>----------------------------------<o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'>The aim
of this list is to facilitate the discussion between users of the FieldTrip
toolbox, to share experiences and to discuss new ideas for MEG and EEG
analysis.<o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'><a
href="http://listserv.surfnet.nl/archives/fieldtrip.html" target="_blank">http://listserv.surfnet.nl/archives/fieldtrip.html</a><o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'><a
href="http://www.ru.nl/fcdonders/fieldtrip/" target="_blank">http://www.ru.nl/fcdonders/fieldtrip/</a><o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'>----------------------------------<o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'>The aim
of this list is to facilitate the discussion between users of the FieldTrip
toolbox, to share experiences and to discuss new ideas for MEG and EEG
analysis.<o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'><a
href="http://listserv.surfnet.nl/archives/fieldtrip.html" target="_blank">http://listserv.surfnet.nl/archives/fieldtrip.html</a><o:p></o:p></span></font></p>

<p><font size=3 face="Times New Roman"><span style='font-size:12.0pt'><a
href="http://www.ru.nl/fcdonders/fieldtrip/" target="_blank">http://www.ru.nl/fcdonders/fieldtrip/</a><o:p></o:p></span></font></p>

</div>

</div>

</div>

<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p> </o:p></span></font></p>

</div>

</body>

</html>
<p>----------------------------------</p>
<p>The aim of this list is to facilitate the discussion between users of the FieldTrip  toolbox, to share experiences and to discuss new ideas for MEG and EEG analysis.</p>
<p>  http://listserv.surfnet.nl/archives/fieldtrip.html</p>
<p>  http://www.ru.nl/fcdonders/fieldtrip/</p>