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<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>Hi Bernhard,<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'>> We have a set of intracranial EEG recordings and
would now like to assess<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> statistical differences between two conditions of
interest. Using the</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> timelockstatistics function, however, it seems to
require a ‘regular’</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> channel array, which we cannot provide with depth
electrodes. That is, we</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> don’t wanna do the cluster analysis across
a spatial cluster, but simply</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> across time. Is this possible in the current
version?</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> The code we took from the tutorial along with the
error message we get is</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> attached below,</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'>If you use cfg.neighbours={} (i.e., an empty
neighbourhood structure), you will only cluster in time and (if present) frequency.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'>Eric Maris<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt;font-family:"Bookman Old Style"'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>dr. <st1:PersonName
style="BACKGROUND-POSITION: left bottom; BACKGROUND-IMAGE: url(res://ietag.dll/#34/#1001); BACKGROUND-REPEAT: repeat-x"
tabIndex="0" w:st="on">Eric Maris</st1:PersonName><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>NICI/Biological
Psychology and<o:p></o:p></span></font></p>
<p class=MsoNormal><st1:place w:st="on"><st1:PlaceName w:st="on"><font size=3
face="Bookman Old Style"><span lang=EN-US style='font-size:12.0pt;font-family:
"Bookman Old Style"'>F.C.</span></font></st1:PlaceName><font
face="Bookman Old Style"><span lang=EN-US style='font-family:"Bookman Old Style"'>
<st1:PlaceName w:st="on">Donders</st1:PlaceName> <st1:PlaceType w:st="on">Center</st1:PlaceType></span></font></st1:place><font
face="Bookman Old Style"><span lang=EN-US style='font-family:"Bookman Old Style"'>
for Cognitive NeuroImaging<o:p></o:p></span></font></p>
<p class=MsoNormal><st1:place w:st="on"><st1:PlaceType w:st="on"><font size=3
face="Bookman Old Style"><span lang=EN-US style='font-size:12.0pt;font-family:
"Bookman Old Style"'>University</span></font></st1:PlaceType><font
face="Bookman Old Style"><span lang=EN-US style='font-family:"Bookman Old Style"'>
of <st1:PlaceName w:st="on">Nijmegen</st1:PlaceName></span></font></st1:place><font
face="Bookman Old Style"><span lang=EN-US style='font-family:"Bookman Old Style"'><o:p></o:p></span></font></p>
<p class=MsoNormal><st1:address w:st="on"><st1:Street w:st="on"><font size=3
face="Bookman Old Style"><span lang=EN-US style='font-size:12.0pt;font-family:
"Bookman Old Style"'>P.O. Box</span></font></st1:Street><font
face="Bookman Old Style"><span lang=EN-US style='font-family:"Bookman Old Style"'>
9104</span></font></st1:address><font face="Bookman Old Style"><span
lang=EN-US style='font-family:"Bookman Old Style"'><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>6500 HE Nijmegen<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>The <st1:place w:st="on"><st1:country-region
w:st="on">Netherlands</st1:country-region></st1:place><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>T:+31 24 3612651
(NICI)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>T:+31 24 3610754
(FCDC)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>F:+31 24 3616066
(NICI)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>E: maris@nici.ru.nl<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>MSc Cognitive
Neuroscience :</span></font><font size=1 face=Verdana><span style='font-size:
9.0pt;font-family:Verdana'><a href="http://www.ru.nl/master/cns/"
title="blocked::http://www.ru.nl/master/cns/
http://www.ru.nl/master/cns/"><font
size=3 face="Bookman Old Style" title="blocked::http://www.ru.nl/master/cns/"><span
title="blocked::http://www.ru.nl/master/cns/"><span lang=EN-US
style='font-size:12.0pt;font-family:"Bookman Old Style"'>www.ru.nl/master/cns/</span></span></font></a></span></font><font
size=1 face=Verdana><span lang=EN-US style='font-size:9.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span lang=EN-US
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> Thanks,</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> Bernhard</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> --- CODE</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg = [];</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.correctm = 'no';</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.method = 'montecarlo';</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.statistic = 'indepsamplesT';</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.clusteralpha = 0.05;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.clusterstatistic = 'maxsum';</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.minnbchan = 0;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.tail = 0;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.clustertail = 0;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.alpha = 0.05;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.numrandomization = 100;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> design =
zeros(1,size(cond1.trial,1)+size(cond2.trial,1));</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> design(1,1:size(cond1.trial,1)) = 1;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> design(1,(size(cond1.trial,1)+1:(size(cond1.trial,1)+size(cond2.trial,1))))
= 2;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.design = design;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.ivar = 1;</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.channel = {'all'};</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.latency = [0 1];</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> [stat] = timelockstatistics(cfg, cond1, cond2);</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> -- ERROR</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> >> [stat] = timelockstatistics(cfg, cond1,
cond2);</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> selected 32 channels</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> selected 1000 time bins</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> selected 1 frequency bins</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> Warning: PACK can only be used from the MATLAB
command line.</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> > In
fieldtrip-0.9.8/private/prepare_timefreq_data at 310</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> In
fieldtrip-0.9.8/private/statistics_wrapper at 187</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> In timelockstatistics at 102</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> ??? Undefined function or variable
"sens".</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> Error in ==> neighbourselection at 87</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> if ~isstruct(sens)</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> Error in ==>
fieldtrip-0.9.8/private/statistics_wrapper at 211</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> cfg.neighbours =
neighbourselection(cfg,varargin{1});</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> Error in ==> timelockstatistics at 102</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> [stat] = statistics_wrapper(cfg, varargin{:});</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> </span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> ----------------------------------</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> The aim of this list is to facilitate the
discussion between users of the FieldTrip</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> toolbox, to share experiences and to discuss new
ideas for MEG and EEG analysis.</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> See also
http://listserv.surfnet.nl/archives/fieldtrip.html and</span></font></p>
<p class=MsoPlainText><font size=3 face="Bookman Old Style"><span
style='font-size:12.0pt'>> http://www.ru.nl/fcdonders/fieldtrip.</span></font></p>
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<p>----------------------------------</p>
<p>The aim of this list is to facilitate the discussion between users of the FieldTrip toolbox, to share experiences and to discuss new ideas for MEG and EEG analysis.</p>
<p> http://listserv.surfnet.nl/archives/fieldtrip.html</p>
<p> http://www.ru.nl/fcdonders/fieldtrip/</p>