[FieldTrip] fieldtrip Digest, Vol 128, Issue 10

Tue Jul 13 11:03:04 CEST 2021

Hi Rene,

> Can I use this atlas imported to functional connectivity study  of EEG?

Perhaps.

> How so?

The books are not yet closed on this one.

One way could be to create time series of source reconstructed data at the parcel level, and compute connectivity from those time series. Alternatively, one could  connectivity between all pairs of dipoles in a source model, and ‘parcellate’ the connectivity matrix, based on the atlas.
I would be careful though with a too fine-grained parcellation of cerebellum (in combination with probably not too large #channel EEG), because the spatial resolution in that area of the brain is probably not whopping.

You can have a look at: 
https://www.fieldtriptoolbox.org/tutorial/networkanalysis_eeg/

and
https://www.fieldtriptoolbox.org/tutorial/networkanalysis_meg/

for inspiration.

Best wishes,
Jan-Mathijs

> Thats is the only purpose of my question. I’m sorry I didn’t mention earlier. 
> 
> Best, 
> Rene Andrade. 
> 
> Sent from my iPhone
> 
>> On 10 Jul 2021, at 12:11, fieldtrip-request at science.ru.nl wrote:
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>> Today's Topics:
>> 
>>  1. Cerebellar atlas import (Andrade Rey René)
>>  2. Fwd: AMIE & SuSIE 2021 (Carsten Wolters)
>>  3. Re: Cerebellar atlas import (Schoffelen, J.M. (Jan Mathijs))
>> 
>> 
>> ----------------------------------------------------------------------
>> 
>> Message: 1
>> Date: Fri, 9 Jul 2021 11:21:36 +0000
>> From: Andrade Rey René <rene.andrade at edu.uah.es>
>> To: "fieldtrip at science.ru.nl" <fieldtrip at science.ru.nl>
>> Subject: [FieldTrip] Cerebellar atlas import
>> Message-ID: <F0BDB648-BB5B-4CBF-AD66-D9CFD48C8DD3 at edu.uah.es>
>> Content-Type: text/plain; charset="iso-8859-1"
>> 
>> Dear experts:
>> 
>> I am having difficulty finding a template atlas with the cerebellum. I was wondering may be it is possible to use this templates(https://urldefense.com/v3/__http://www.diedrichsenlab.org/imaging/atlasPackage.htm__;!!HJOPV4FYYWzcc1jazlU!vTYxX4j0c-W7T0RxVdmOMJzzIH23VDxwpdRyDF05XV6CZ6Pehfi0gOeAfnu6Nx9Ifvb78pwqX_sLMAo$ ) in fieldtrip. Is it feasible?
>> Thanks in advance!
>> 
>> Best,
>> Rene Andrade.
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>> ------------------------------
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>> Message: 2
>> Date: Fri, 9 Jul 2021 15:40:40 +0200
>> From: Carsten Wolters <carsten.wolters at uni-muenster.de>
>> To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>> Subject: [FieldTrip] Fwd: AMIE & SuSIE 2021
>> Message-ID: <89fc4f12-ec2a-92c7-a1fb-e51f7519dec0 at uni-muenster.de>
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>> 
>> 
>> 
>> -------- Weitergeleitete Nachricht --------
>> Betreff:    AMIE & SuSIE 2021
>> Datum:    Fri, 09 Jul 2021 14:12:03 +0200
>> Von:    AMIE-SuSIE-academy <AMIE-SuSIE-academy at somces.org>
>> An:    wellmer <wellmer at somecs.org>
>> 
>> 
>> 
>> Dear SuSIE and AMIE Alumni,
>> we are ready to launch the 2021 edition of the
>> ·*AMIE* -  Annual Meeting on Imaging and Electrophysiology in Neurology, 
>> Neurosurgery and (cognitive)                     Neuroscience  - 13 – 15 
>> Sept 2021 (methodological conference)
>> ·*SuSIE* - Summer School on Imaging in Epileptology - 15 – 17 Sept 2021 
>> (summer school for adult and pediatric           epileptologists)
>> Due to the ongoing Covid-pandemic, we have opted for an online-only 
>> format again, using the “GotoWebinar” platform.
>> Please check out the program at https://urldefense.com/v3/__http://www.susie.academy__;!!HJOPV4FYYWzcc1jazlU!vTYxX4j0c-W7T0RxVdmOMJzzIH23VDxwpdRyDF05XV6CZ6Pehfi0gOeAfnu6Nx9Ifvb78pwqORdIYyE$  
>> <https://urldefense.com/v3/__http://www.susie.academy/__;!!HJOPV4FYYWzcc1jazlU!vTYxX4j0c-W7T0RxVdmOMJzzIH23VDxwpdRyDF05XV6CZ6Pehfi0gOeAfnu6Nx9Ifvb78pwqVFnhbjE$ > and https://urldefense.com/v3/__http://www.amie.academy__;!!HJOPV4FYYWzcc1jazlU!vTYxX4j0c-W7T0RxVdmOMJzzIH23VDxwpdRyDF05XV6CZ6Pehfi0gOeAfnu6Nx9Ifvb78pwqnh-nVZ8$  
>> <https://urldefense.com/v3/__http://www.amie.academy/__;!!HJOPV4FYYWzcc1jazlU!vTYxX4j0c-W7T0RxVdmOMJzzIH23VDxwpdRyDF05XV6CZ6Pehfi0gOeAfnu6Nx9Ifvb78pwq-XTehUg$ > and take the opportunity to book directly.
>> We are proud to have found established workshop leaders and SuSIE 
>> lecturers again who will introduce you to the scientific or clinical 
>> topic at the highest but nevertheless applicable level. If you are 
>> interested in participating in the methodological conference AMIE, we 
>> invite you to contact the named workshop leaders and make suggestions 
>> for your own contribution.
>> In addition, we plan thematic investigator workshops within which you 
>> may present your own study results, invite others to participate in your 
>> own studies or search for cooperation partners for future projects.
>> We kindly ask you to spread the word and point out the AMIE and SuSIE to 
>> your peers and colleagues, in particular junior scientists and 
>> neurologists and neurosurgeons in training.
>> We are looking forward to meeting you at this year’s AMIE and SuSIE in 
>> September.
>> For the AMIE and SuSIE organizing committee,
>> Jörg Wellmer
>> 
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>> ------------------------------
>> 
>> Message: 3
>> Date: Fri, 9 Jul 2021 14:15:09 +0000
>> From: "Schoffelen, J.M. (Jan Mathijs)"
>>   <janmathijs.schoffelen at donders.ru.nl>
>> To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>> Subject: Re: [FieldTrip] Cerebellar atlas import
>> Message-ID: <CFAD74FF-72B3-426E-B47E-DD164F29AAE6 at donders.ru.nl>
>> Content-Type: text/plain; charset="utf-8"
>> 
>> Hi René,
>> 
>> As you can read from the code in ft_read_atlas, FieldTrip supports the reading of ‘fsl’ formatted atlases. The linked page you provide mentions that the cerebellar atlas is shipped with FSL, so I think that indeed it is feasible.
>> 
>> Good luck,
>> Jan-Mathijs
>> 
>> 
>> On 9 Jul 2021, at 13:21, Andrade Rey René via fieldtrip <fieldtrip at science.ru.nl<mailto:fieldtrip at science.ru.nl>> wrote:
>> 
>> Dear experts:
>> 
>> I am having difficulty finding a template atlas with the cerebellum. I was wondering may be it is possible to use this templates(https://urldefense.com/v3/__http://www.diedrichsenlab.org/imaging/atlasPackage.htm__;!!HJOPV4FYYWzcc1jazlU!vTYxX4j0c-W7T0RxVdmOMJzzIH23VDxwpdRyDF05XV6CZ6Pehfi0gOeAfnu6Nx9Ifvb78pwqX_sLMAo$ <https://urldefense.com/v3/__http://www.diedrichsenlab.org/imaging/atlasPackage.htm__;!!HJOPV4FYYWzcc1jazlU!vEv1log74iIpaznj4F8c3eAL5MZ6buJP4jqSbLZoSdwsbOMu8vf3rLxLXhZ4mDgc83_ObxiVxa49Sz4$>) in fieldtrip. Is it feasible?
>> Thanks in advance!
>> 
>> Best,
>> Rene Andrade.
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